https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
AustralianMicrobiome_metadata_defs_url
SAMN44625854
External Id
CSIRO
INSDC center name
2024-11-07T00:00:00Z
INSDC first public
2024-11-07T17:49:33.190Z
INSDC last update
SRS23145649
INSDC secondary accession
live
INSDC status
MIMS.me
NCBI submission model
MIGS/MIMS/MIMARKS.water
NCBI submission model
MIMS.me.water.6.0
NCBI submission package
SRS23145649
SRA accession
2337.42 μmol/kg
alkalinity
meth_2.2 (https://research.csiro.au/ambsm/)
alkalinity_meth
below detection limit
allo
meth_2.2 (https://research.csiro.au/ambsm/)
allo_meth
0.01 mg/m3
alpha_beta_car
meth_2.2 (https://research.csiro.au/ambsm/)
alpha_beta_car_meth
0.06 μmol/L
ammonium
meth_2.2 (https://research.csiro.au/ambsm/)
ammonium_meth
below detection limit
anth
meth_2.2 (https://research.csiro.au/ambsm/)
anth_meth
below detection limit
asta
meth_2.2 (https://research.csiro.au/ambsm/)
asta_meth
Not provided
bicarbonate
Not provided
bicarbonate_meth
free living
biotic_relationship
0.018 mg/m3
but_fuco
meth_2.2 (https://research.csiro.au/ambsm/)
but_fuco_meth
below detection limit
cantha
meth_2.2 (https://research.csiro.au/ambsm/)
cantha_meth
Not provided
carbonate
Not provided
carbonate_meth
Not provided
chloride
Not provided
chloride_meth
0.172 mg/m3
chlorophyll_a
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_a_meth
0.022 mg/m3
chlorophyll_b
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_b_meth
below detection limit
chlorophyll_c1
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_c1_meth
0.026 mg/m3
chlorophyll_c2
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_c2_meth
0.019 mg/m3
chlorophyll_c3
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_c3_meth
0.1187 mg/m3
chlorophyll_ctd
meth_2.2 (https://research.csiro.au/ambsm/)
chlorophyll_ctd_meth
2017-12-11T21:54:00Z
collection_date
4.9928 S/m
conductivity_aqueous
meth_2.2 (https://research.csiro.au/ambsm/)
conductivity_aqueous_meth
0.006 mg/m3
cphlide_a
meth_2.2 (https://research.csiro.au/ambsm/)
cphlide_a_meth
1024.9215 kg/m3
density
meth_2.2 (https://research.csiro.au/ambsm/)
density_meth
0 m
depth
Keywords: GSC:MIxS;MIMS:6.0
description
Not provided
diadchr
Not provided
diadchr_meth
0.011 mg/m3
diadino
meth_2.2 (https://research.csiro.au/ambsm/)
diadino_meth
below detection limit
diato
meth_2.2 (https://research.csiro.au/ambsm/)
diato_meth
below detection limit
dino
meth_2.2 (https://research.csiro.au/ambsm/)
dino_meth
0.006 mg/m3
dv_cphl_a
0.178 mg/m3
dv_cphl_a_and_cphl_a
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_a_and_cphl_a_meth
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_a_meth
below detection limit
dv_cphl_b
0.022 mg/m3
dv_cphl_b_and_cphl_b
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_b_and_cphl_b_meth
meth_2.2 (https://research.csiro.au/ambsm/)
dv_cphl_b_meth
below detection limit
echin
meth_2.2 (https://research.csiro.au/ambsm/)
echin_meth
7 Other
env_broad_scale
7.2.1 Open ocean water-conservation
env_local_scale
Sea water [ENVO_00002149]
env_medium
0.034 mg/m3
fuco
meth_2.2 (https://research.csiro.au/ambsm/)
fuco_meth
IMOS|CSIRO
funding_agency
Marine - neritic (coastal off shore)
general_env_feature
Australia:East Australian Current [GAZ_00000352]
geo_loc_name
below detection limit
gyro
meth_2.2 (https://research.csiro.au/ambsm/)
gyro_meth
0.031 mg/m3
hex_fuco
meth_2.2 (https://research.csiro.au/ambsm/)
hex_fuco_meth
Not provided
icp_te_boron
Not provided
icp_te_boron_meth
Not provided
icp_te_calcium
Not provided
icp_te_calcium_meth
Not provided
icp_te_copper
Not provided
icp_te_copper_meth
Not provided
icp_te_iron
Not provided
icp_te_iron_meth
Not provided
icp_te_manganese
Not provided
icp_te_manganese_meth
Not provided
icp_te_phosphorus
Not provided
icp_te_phosphorus_meth
Not provided
icp_te_sulfur
Not provided
icp_te_sulfur_meth
Not provided
icp_te_zinc
Not provided
icp_te_zinc_meth
NRSPHB
imos_site_code
102.100.100/139781_0
isolate
Pelagic
isolation_source
below detection limit
keto_hex_fuco
meth_2.2 (https://research.csiro.au/ambsm/)
keto_hex_fuco_meth
34.1192 S 151.2267 E
lat_lon
below detection limit
lut
meth_2.2 (https://research.csiro.au/ambsm/)
lut_meth
Not provided
lyco
Not provided
lyco_meth
Not provided
magnesium
Not provided
magnesium_meth
below detection limit
mg_dvp
meth_2.2 (https://research.csiro.au/ambsm/)
mg_dvp_meth
408172
ncbi_txid
0.002 mg/m3
neo
meth_2.2 (https://research.csiro.au/ambsm/)
neo_meth
below detection limit
nitrate
meth_2.2 (https://research.csiro.au/ambsm/)
nitrate_meth
Not provided
nitrate_nitrite
Not provided
nitrate_nitrite_meth
below detection limit
nitrite
meth_2.2 (https://research.csiro.au/ambsm/)
nitrite_meth
collection_date:CTD SampleTime_UTC|CTD depth:1.986
notes
PHB20171211_0
nrs_sample_code
PHB20171211
nrs_trip_code
meth_3.1.9 (https://research.csiro.au/ambsm/)
nucl_acid_ext
marine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408172
organism
Not provided
oxygen
231.4076 mL/L
oxygen_ctd_vol
meth_2.2 (https://research.csiro.au/ambsm/)
oxygen_ctd_vol_meth
Not provided
oxygen_meth
0.007 mg/m3
perid
meth_2.2 (https://research.csiro.au/ambsm/)
perid_meth
Not provided
ph
Not provided
ph_meth
below detection limit
phide_a
meth_2.2 (https://research.csiro.au/ambsm/)
phide_a_meth
0.09 μmol/L
phosphate
meth_2.2 (https://research.csiro.au/ambsm/)
phosphate_meth
below detection limit
phytin_a
meth_2.2 (https://research.csiro.au/ambsm/)
phytin_a_meth
below detection limit
phytin_b
meth_2.2 (https://research.csiro.au/ambsm/)
phytin_b_meth
8423 cells/mL
picoeukaryotes
meth_2.2 (https://research.csiro.au/ambsm/)
picoeukaryotes_meth
Not provided
potassium
Not provided
potassium_meth
0.003 mg/m3
pras
meth_2.2 (https://research.csiro.au/ambsm/)
pras_meth
4041 cells/mL
prochlorococcus
meth_2.2 (https://research.csiro.au/ambsm/)
prochlorococcus_meth
below detection limit
pyrophide_a
meth_2.2 (https://research.csiro.au/ambsm/)
pyrophide_a_meth
below detection limit
pyrophytin_a
meth_2.2 (https://research.csiro.au/ambsm/)
pyrophytin_a_meth
35.6254 PSU
salinity
35.619 PSU
salinity_lab
meth_2.2 (https://research.csiro.au/ambsm/)
salinity_lab_meth
meth_2.2 (https://research.csiro.au/ambsm/)
salinity_meth
meth_1.4 (https://research.csiro.au/ambsm/)
samp_collect_device
meth_1.4 (https://research.csiro.au/ambsm/)
samp_mat_process
2 L
samp_size
2 L
samp_vol_we_dna_ext
IMOS|CSIRO
sample_attribution
102.100.100/139781
sample_id
Port Hacking
sample_site_location_description
Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_submitter
Pelagic
sample_type
Other - not recorded in field log sheets [assume 2 L as per protocol]
sample_volume_notes
19 m
secchi_depth
meth_2.2 (https://research.csiro.au/ambsm/)
secchi_depth_meth
0.2 μmol/L
silicate
meth_2.2 (https://research.csiro.au/ambsm/)
silicate_meth
Not provided
sodium
Not provided
sodium_meth
http://hdl.handle.net/102.100.100/139781
source_mat_id
meth_1.4 (https://research.csiro.au/ambsm/)
store_cond
28054.5 cells/mL
synechococcus
meth_2.2 (https://research.csiro.au/ambsm/)
synechococcus_meth
21.2044 degC
temp
meth_2.2 (https://research.csiro.au/ambsm/)
temp_meth
102.100.100/139781
title
2037.86 μmol/kg
total_co2
meth_2.2 (https://research.csiro.au/ambsm/)
total_co2_meth
0.4 mg/L
tss
meth_2.2 (https://research.csiro.au/ambsm/)
tss_meth
0.0428 NTU
turbidity
meth_2.2 (https://research.csiro.au/ambsm/)
turbidity_meth
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139781
url
below detection limit
viola
meth_2.2 (https://research.csiro.au/ambsm/)
viola_meth
0.02 mg/m3
zea
meth_2.2 (https://research.csiro.au/ambsm/)
zea_meth
23.9692 mg/m3
zooplankton_biomass
meth_2.2int (https://research.csiro.au/ambsm/)
zooplankton_biomass_meth