https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
AustralianMicrobiome_metadata_defs_url
SAMN44625988
External Id
CSIRO
INSDC center name
2024-11-07T00:00:00Z
INSDC first public
2024-11-07T17:56:50.437Z
INSDC last update
SRS23145793
INSDC secondary accession
live
INSDC status
MIMS.me
NCBI submission model
MIGS/MIMS/MIMARKS.water
NCBI submission model
MIMS.me.water.6.0
NCBI submission package
SRS23145793
SRA accession
2332.69 μmol/kg
alkalinity
meth_2.2 (https://research.csiro.au/ambsm/)
alkalinity_meth
Not provided
allo
Not provided
allo_meth
Not provided
alpha_beta_car
Not provided
alpha_beta_car_meth
Not provided
ammonium
Not provided
ammonium_meth
Not provided
anth
Not provided
anth_meth
Not provided
asta
Not provided
asta_meth
Not provided
bicarbonate
Not provided
bicarbonate_meth
free living
biotic_relationship
Not provided
but_fuco
Not provided
but_fuco_meth
Not provided
cantha
Not provided
cantha_meth
Not provided
carbonate
Not provided
carbonate_meth
Not provided
chloride
Not provided
chloride_meth
Not provided
chlorophyll_a
Not provided
chlorophyll_a_meth
Not provided
chlorophyll_b
Not provided
chlorophyll_b_meth
Not provided
chlorophyll_c1
Not provided
chlorophyll_c1_meth
Not provided
chlorophyll_c2
Not provided
chlorophyll_c2_meth
Not provided
chlorophyll_c3
Not provided
chlorophyll_c3_meth
Not provided
chlorophyll_ctd
Not provided
chlorophyll_ctd_meth
2019-12-20T00:20:00Z
collection_date
4.6967 S/m
conductivity_aqueous
meth_2.2 (https://research.csiro.au/ambsm/)
conductivity_aqueous_meth
Not provided
cphlide_a
Not provided
cphlide_a_meth
1025.8181 kg/m3
density
meth_2.2 (https://research.csiro.au/ambsm/)
density_meth
50 m
depth
Keywords: GSC:MIxS;MIMS:6.0
description
Not provided
diadchr
Not provided
diadchr_meth
Not provided
diadino
Not provided
diadino_meth
Not provided
diato
Not provided
diato_meth
Not provided
dino
Not provided
dino_meth
Not provided
dv_cphl_a
Not provided
dv_cphl_a_and_cphl_a
Not provided
dv_cphl_a_and_cphl_a_meth
Not provided
dv_cphl_a_meth
Not provided
dv_cphl_b
Not provided
dv_cphl_b_and_cphl_b
Not provided
dv_cphl_b_and_cphl_b_meth
Not provided
dv_cphl_b_meth
Not provided
echin
Not provided
echin_meth
7 Other
env_broad_scale
7.2.1 Open ocean water-conservation
env_local_scale
Sea water [ENVO_00002149]
env_medium
Not provided
fuco
Not provided
fuco_meth
IMOS|CSIRO
funding_agency
Marine - neritic (coastal off shore)
general_env_feature
Australia:Moreton Bay Marine Park [GAZ_00088305]
geo_loc_name
Not provided
gyro
Not provided
gyro_meth
Not provided
hex_fuco
Not provided
hex_fuco_meth
Not provided
icp_te_boron
Not provided
icp_te_boron_meth
Not provided
icp_te_calcium
Not provided
icp_te_calcium_meth
Not provided
icp_te_copper
Not provided
icp_te_copper_meth
Not provided
icp_te_iron
Not provided
icp_te_iron_meth
Not provided
icp_te_manganese
Not provided
icp_te_manganese_meth
Not provided
icp_te_phosphorus
Not provided
icp_te_phosphorus_meth
Not provided
icp_te_sulfur
Not provided
icp_te_sulfur_meth
Not provided
icp_te_zinc
Not provided
icp_te_zinc_meth
NRSNSI
imos_site_code
102.100.100/139929_50
isolate
Pelagic
isolation_source
Not provided
keto_hex_fuco
Not provided
keto_hex_fuco_meth
27.345 S 153.562 E
lat_lon
Not provided
lut
Not provided
lut_meth
Not provided
lyco
Not provided
lyco_meth
Not provided
magnesium
Not provided
magnesium_meth
Not provided
mg_dvp
Not provided
mg_dvp_meth
408172
ncbi_txid
Not provided
neo
Not provided
neo_meth
7.8 μmol/L
nitrate
meth_2.2 (https://research.csiro.au/ambsm/)
nitrate_meth
Not provided
nitrate_nitrite
Not provided
nitrate_nitrite_meth
0.26 μmol/L
nitrite
meth_2.2 (https://research.csiro.au/ambsm/)
nitrite_meth
collection_date:CTD SampleTime_UTC|CTD depth:49.664
notes
NSI20191220_50
nrs_sample_code
NSI20191220
nrs_trip_code
meth_3.1.9 (https://research.csiro.au/ambsm/)
nucl_acid_ext
marine metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408172
organism
Not provided
oxygen
169.2857 mL/L
oxygen_ctd_vol
meth_2.2 (https://research.csiro.au/ambsm/)
oxygen_ctd_vol_meth
Not provided
oxygen_meth
Not provided
perid
Not provided
perid_meth
Not provided
ph
Not provided
ph_meth
Not provided
phide_a
Not provided
phide_a_meth
0.62 μmol/L
phosphate
meth_2.2 (https://research.csiro.au/ambsm/)
phosphate_meth
Not provided
phytin_a
Not provided
phytin_a_meth
Not provided
phytin_b
Not provided
phytin_b_meth
27950.5 cells/mL
picoeukaryotes
meth_2.2int (https://research.csiro.au/ambsm/)
picoeukaryotes_meth
Not provided
potassium
Not provided
potassium_meth
Not provided
pras
Not provided
pras_meth
1223 cells/mL
prochlorococcus
meth_2.2int (https://research.csiro.au/ambsm/)
prochlorococcus_meth
Not provided
pyrophide_a
Not provided
pyrophide_a_meth
Not provided
pyrophytin_a
Not provided
pyrophytin_a_meth
35.5701 PSU
salinity
35.548 PSU
salinity_lab
meth_2.2 (https://research.csiro.au/ambsm/)
salinity_lab_meth
meth_2.2 (https://research.csiro.au/ambsm/)
salinity_meth
meth_1.4 (https://research.csiro.au/ambsm/)
samp_collect_device
meth_1.4 (https://research.csiro.au/ambsm/)
samp_mat_process
2 L
samp_size
2 L
samp_vol_we_dna_ext
IMOS|CSIRO
sample_attribution
102.100.100/139929
sample_id
North Stradbroke Island
sample_site_location_description
Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_submitter
Pelagic
sample_type
Not provided
sample_volume_notes
17 m
secchi_depth
meth_2.2 (https://research.csiro.au/ambsm/)
secchi_depth_meth
2.8 μmol/L
silicate
meth_2.2 (https://research.csiro.au/ambsm/)
silicate_meth
Not provided
sodium
Not provided
sodium_meth
http://hdl.handle.net/102.100.100/139929
source_mat_id
meth_1.4 (https://research.csiro.au/ambsm/)
store_cond
32903 cells/mL
synechococcus
meth_2.2int (https://research.csiro.au/ambsm/)
synechococcus_meth
18.3735 degC
temp
meth_2.2 (https://research.csiro.au/ambsm/)
temp_meth
102.100.100/139929
title
2109.1 μmol/kg
total_co2
meth_2.2 (https://research.csiro.au/ambsm/)
total_co2_meth
0.6 mg/L
tss
meth_2.2int (https://research.csiro.au/ambsm/)
tss_meth
0.228 NTU
turbidity
meth_2.2 (https://research.csiro.au/ambsm/)
turbidity_meth
https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139929
url
Not provided
viola
Not provided
viola_meth
Not provided
zea
Not provided
zea_meth
9.786 mg/m3
zooplankton_biomass
meth_2.2int (https://research.csiro.au/ambsm/)
zooplankton_biomass_meth