SAMN45063415
External Id
G10K
INSDC center name
2024-11-26T00:00:00Z
INSDC first public
2024-11-26T13:55:04.994Z
INSDC last update
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
MACA-2023-SCI-0021
Permit
University of Kentucky: Jeremiah Smith
biomaterial_provider
Jeremiah Smith
collected_by
2023-09-05
collection_date
The northern cavefish or northern blindfish (Amblyopsis spelaea) is found in caves through Kentucky and southern Indiana. The International Union for Conservation of Nature lists the species as near threatened. (from Wikipedia entry). This sample of a female individual found in Mammoth Cave, Kentucky, was procured by Jeremiah Smith to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
description
adult
dev_stage
USA: Mammoth Cave, Kentucky
geo_loc_name
fAmbSpe1
isolate
37.187 N 86.102 W
lat_lon
Amblyopsis spelaea
http://purl.obolibrary.org/obo/NCBITaxon_1195602
organism
female
sex
-80oC
store_cond
muscle, liver
tissue
Animal sample from Amblyopsis spelaea (northern cavefish) for VGP reference genome, fAmbSpe1
title
snap frozen
treatment