2025-02-17
ENA first public
ERC000050
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS23401799
SRA accession
ERR2762105_concoct_12
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.14.1
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
water
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
97.74
%
completeness score
EukCC_v2.1.0
completeness software
0.0
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR2762105 of study ERP010882.
description
tara
environmental medium
not provided
geographic location (country and/or sea)
54.53050000
DD
geographic location (latitude)
-16.93770000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
ocean
local environmental context
marine metagenome
metagenomic source
Setomelanomma holmii
organism
Analysis of the genes and genomes present in Tara Oceans Polar Circle virus size fractions through shotgun DNA sequencing. Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA4396441
sample derived from
Setomelanomma holmii
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: ERR2762105_concoct_12
title