PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-17
ENA first public
ERC000050
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23401725
SRA accession
1bbb6285-2609-438d-b6ec-29c2dfbd3559
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KYLIE PITT
collected_by
GRIFFITH UNIVERSITY
collecting institution
2022-02-15
collection date
98.34
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.71
%
contamination score
0
m
depth
adult jellyfish tissue
environmental medium
Australia
geographic location (country and/or sea)
-27.96
DD
geographic location (latitude)
153.42
DD
geographic location (longitude)
Queensland | Griffith Sea Jellies Research Laboratory
geographic location (region and locality)
Aquarium
habitat
adult
host life stage
Catostylus mosaicus
host scientific name
not collected
host sex
237413
host taxid
KYLIE PITT
identified_by
GRIFFITH UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Catostylus mosaicus
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
38
number of standard tRNAs extracted
Anaplasmataceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Collected by dip net from aquarium
sample collection method
SAMEA117702610
sample derived from
Anaplasmataceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000504
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
1bbb6285-2609-438d-b6ec-29c2dfbd3559-asg-MAGScoT_cleanbin_000002
title
jsCatMosa1.Anaplasmataceae_1
tolid