2025-02-17
ENA first public
ERC000050
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS23397072
SRA accession
ERR599146_concoct_29
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.11.0
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
water
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
66.0
%
completeness score
EukCC_v2.1.0
completeness software
0.4
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run ERR599146 of study ERP001736.
description
tara
environmental medium
not provided
geographic location (country and/or sea)
-35.17280000
DD
geographic location (latitude)
26.28680000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
ocean
local environmental context
marine metagenome
metagenomic source
Ostreococcus sp.
organism
Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2620855
sample derived from
Ostreococcus sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: ERR599146_concoct_29
title