PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-17
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23401708
SRA accession
e44aeda8-71e7-4478-9da6-5c8a8154f7e5
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ALISON HANSON
collected_by
COLUMBIA UNIVERSITY
collecting institution
2018-07-05
collection date
green hydra
common name
87.28
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.81
%
contamination score
0.5
m
depth
adult hydrozoan tissue
environmental medium
USA
geographic location (country and/or sea)
41.56
DD
geographic location (latitude)
-70.61
DD
geographic location (longitude)
Massachusetts|Falmouth|Morse Pond
geographic location (region and locality)
Freshwater
habitat
adult
host life stage
Hydra viridissima
host scientific name
not collected
host sex
6082
host taxid
ROBERT STEELE
identified_by
UNIVERSITY OF CALIFORNIA--IRVINE
identifier_affiliation
metagenome-assembled genome
investigation type
Hydrozoan: Hydra viridissima
isolation_source
freshwater biome
local environmental context
hydrozoan metagenome
metagenomic source
48
number of standard tRNAs extracted
Brevundimonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117702604
sample derived from
Brevundimonas sp.
scientific_name
Pacbio Sequel II
sequencing method
NSU0022701
specimen_id
NOT COLLECTED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
e44aeda8-71e7-4478-9da6-5c8a8154f7e5-asg-MAGScoT_cleanbin_000005
title
jhHydViri1.Brevundimonas_sp_1
tolid