PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-17
ENA first public
ERC000047
ENA-CHECKLIST
The Sainsbury Laboratory
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23401616
SRA accession
ab275c91-d314-4fdd-9813-228e12e7990d
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
THE SAINSBURY LABORATORY
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
terrestrial biome
broad-scale environmental context
KLARA SCHARNAGL | NICK TALBOT
collected_by
UC BERKELEY | THE SAINSBURY LABORATORY
collecting institution
2021-10-17
collection date
95.54
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
adult lichen tissue
environmental medium
United Kingdom
geographic location (country and/or sea)
52.72
DD
geographic location (latitude)
1.69
DD
geographic location (longitude)
East Anglia | Norfolk | Winterton on Sea | Winterton Dunes
geographic location (region and locality)
on branches of oak in coastal dunes
habitat
not applicable
host life stage
Xanthoria parietina
host scientific name
not applicable
host sex
107463
host taxid
KLARA SCHARNAGL
identified_by
UC BERKELEY
identifier_affiliation
metagenome-assembled genome
investigation type
Lichen: Xanthoria parietina
isolation_source
forest biome
local environmental context
lichen metagenome
metagenomic source
76
number of standard tRNAs extracted
Isosphaeraceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
NOT PROVIDED
proxy voucher
selected by hand while hiking dunes stored in paper packet
sample collection method
SAMEA117702504
sample derived from
Isosphaeraceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
SL0000003
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
ab275c91-d314-4fdd-9813-228e12e7990d-asg-MAGScoT_cleanbin_000043
title
glXanPari1.Isosphaeraceae_4
tolid