PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-17
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23401654
SRA accession
88e6c63e-ffc9-45fa-8e88-4f18f5eb5cee
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ANDREW BRUCKNER
collected_by
NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION|FLORIDA KEYS NATIONAL MARINE SANCTUARY
collecting institution
2019-09-17
collection date
98.92
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
9
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
24.46
DD
geographic location (latitude)
-81.98
DD
geographic location (longitude)
FLORIDA | KEY WEST | ANDY SITE 4
geographic location (region and locality)
OFFSHORE PATCH REEF
habitat
adult
host life stage
Meandrina meandrites
host scientific name
not collected
host sex
51056
host taxid
ANDREW BRUCKNER
identified_by
NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION|FLORIDA KEYS NATIONAL MARINE SANCTUARY
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Meandrina meandrites
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
32
number of standard tRNAs extracted
Alphaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117702583
sample derived from
Alphaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0022001
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
88e6c63e-ffc9-45fa-8e88-4f18f5eb5cee-asg-MAGScoT_cleanbin_000001
title
jaMeaMean2.Alphaproteobacteria_1
tolid