SAMN43685695
External Id
University of Wisconsin-Madison
INSDC center name
2025-02-15T12:40:06.580Z
INSDC first public
2025-02-15T12:40:06.580Z
INSDC last update
live
INSDC status
MIMAG.miscellaneous
NCBI submission model
MIMAG.miscellaneous.6.0
NCBI submission package
268 m
altitude
2023-10-23
collection_date
SRR31045165
derived-from-SRA
Improved metagenome assembled genome from a ultra-filtered-milk-permeate and cottage cheese acid whey fermenting bioreactor. This bioreactor was operated as a continuously stirred tank reactor with a six day solids and variable hydraulic retention time, under anaerobic conditions.
description
bioreactor [ENVO:00002123]
env_broad_scale
membrane bioreactor [ENVO:03600010]
env_local_scale
dairy food product [FOODON:00001256]
env_medium
1
environmental-sample
USA: Wisconsin, Madison
geo_loc_name
UW_FK_PSEUDOCLA1_1
isolate
anaerobic bioreactor effluent
isolation_source
43.033933 N 89.356452 W
lat_lon
bioreactor metagenome
metagenome-source
1
metagenomic
Pseudoclavibacter caeni
http://purl.obolibrary.org/obo/NCBITaxon_908846
organism
5.5
ph
Syringe
samp_collect_device
Biomass centrifuged 10 min 10,000xg, aliquot frozen for DNA extraction
samp_mat_process
2 milliliter
samp_size
Freezer
samp_store_loc
-80 degree Celcius
samp_store_temp
metagenomic assembly
sample-type
50 degree Celcius
temp
Pseudoclavibacter_A caeni MAG, UW_FK_PSEUDOCLA1_1
title