PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-17
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23401697
SRA accession
fb2ad37c-cd8b-4b81-9784-4a2c6668ed37
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
collected_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
collecting institution
2021-05-08
collection date
72.43
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.26
%
contamination score
9.8
m
depth
adult coral tissue
environmental medium
Puerto Rico
geographic location (country and/or sea)
17.95
DD
geographic location (latitude)
-67.06
DD
geographic location (longitude)
Cayo Mario
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Rhodactis osculifera
host scientific name
not collected
host sex
2751898
host taxid
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
identified_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Rhodactis osculifera
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
31
number of standard tRNAs extracted
Mycoplasmatales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117702601
sample derived from
Mycoplasmatales bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0054905
specimen_id
Sanger Institute Genome PR40
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
fb2ad37c-cd8b-4b81-9784-4a2c6668ed37-asg-MAGScoT_cleanbin_000001
title
jaRhoOscu1.Mycoplasmatales_1
tolid