PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-18
ENA first public
ERC000050
ENA-CHECKLIST
The Sainsbury Laboratory
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23495063
SRA accession
94aabc9d-c302-4ccc-9f62-dd3f9acf016b
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
terrestrial biome
broad-scale environmental context
Sergio Perez-Ortega
collected_by
Real Jardín Botánico, CSIC
collecting institution
2021-08-27
collection date
57.3
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.99
%
contamination score
5
m
elevation
adult lichen tissue
environmental medium
Spain
geographic location (country and/or sea)
43.56
DD
geographic location (latitude)
-6.67
DD
geographic location (longitude)
Asturias | Frjulfe
geographic location (region and locality)
Rock outcrops on Frjulfe beach, supralitoral zone.
habitat
vegetative structure
host life stage
Ramalina siliquosa
host scientific name
not applicable
host sex
56482
host taxid
Sergio Perez-Ortega
identified_by
Real Jardín Botánico, CSIC
identifier_affiliation
metagenome-assembled genome
investigation type
Lichen: Ramalina siliquosa
isolation_source
grassland biome
local environmental context
lichen metagenome
metagenomic source
40
number of standard tRNAs extracted
Rhodopila sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
Lichen
relationship
COLLECTED BY HAND
sample collection method
SAMEA117729147
sample derived from
Rhodopila sp.
scientific_name
Pacbio Sequel II
sequencing method
SL0000017
specimen_id
nan
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
94aabc9d-c302-4ccc-9f62-dd3f9acf016b-asg-MAGScoT_cleanbin_000009
title
glRamSili2.Rhodopila_sp_1
tolid