2025-02-18
ENA first public
ERC000050
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS23412682
SRA accession
SRR5788104_metabat2_6
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.3
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
water
broad-scale environmental context
EBI-EMG
broker name
2011-03-08
collection date
87.8
%
completeness score
EukCC_v2.1.0
completeness software
0.2
%
contamination score
This sample represents a Third Party Annotation (TPA) binned metagenome assembled from the metagenomic run SRR5788104 of study SRP110813.
description
ocean
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
-46.90700000
DD
geographic location (latitude)
-47.17900000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
marine
local environmental context
marine metagenome
metagenomic source
Ostreococcus lucimarinus CCE9901
organism
Marine metagenomes from the bioGEOTRACES project Metagenome
project name
SAMN07136683
sample derived from
Ostreococcus lucimarinus CCE9901
scientific_name
NextSeq 550
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SRR5788104_metabat2_6
title