PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
The Sainsbury Laboratory
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23582818
SRA accession
2e021e5b-4197-4a4c-91a5-9a946adb5327
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Tony Robinet
collected_by
MNHN CONCARNEAU
collecting institution
2022-05-05
collection date
98.1
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.01
%
contamination score
adult lichen tissue
environmental medium
France
geographic location (country and/or sea)
47.89
DD
geographic location (latitude)
-3.94
DD
geographic location (longitude)
Finistère | Concarneau | Anse St Jean
geographic location (region and locality)
Estuarine rocky shore
habitat
not applicable
host life stage
Verrucaria ditmarsica
host scientific name
not applicable
host sex
644161
host taxid
Tony Robinet
identified_by
MNHN CONCARNEAU
identifier_affiliation
metagenome-assembled genome
investigation type
Lichen: Verrucaria ditmarsica
isolation_source
marine biome
local environmental context
lichen metagenome
metagenomic source
42
number of standard tRNAs extracted
Hymenobacter sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
COLLECTED BY HAND
sample collection method
SAMEA117735999
sample derived from
Hymenobacter sp.
scientific_name
Pacbio Sequel II
sequencing method
SL0000008
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
2e021e5b-4197-4a4c-91a5-9a946adb5327-asg-MAGScoT_cleanbin_000035
title
gpVerDitm2.Hymenobacter_sp_1
tolid