PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23572406
SRA accession
d4c509b6-070b-42c5-911b-fe9363730365
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
David Combosch
collected_by
University of Guam
collecting institution
2021-05-24
collection date
85.47
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.68
%
contamination score
1
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
13.48
DD
geographic location (latitude)
144.74
DD
geographic location (longitude)
Guam | Hagatna | West Agana Bay
geographic location (region and locality)
lagoon
habitat
adult
host life stage
Acropora pulchra
host scientific name
hermaphrodite
host sex
140239
host taxid
DAVID COMBOSCH
identified_by
UNIVERSITY OF GUAM
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Acropora pulchra
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
30
number of standard tRNAs extracted
Simkaniaceae bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117735852
sample derived from
Simkaniaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000426
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
d4c509b6-070b-42c5-911b-fe9363730365-asg-MAGScoT_cleanbin_000001
title
jaAcrPulc1.Simkaniaceae_1
tolid