PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23574146
SRA accession
2fa840d3-4724-4451-867f-1fd820e3f40a
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
JUAN SANCHEZ
collected_by
UNIVERSIDAD DE LOS ANDES
collecting institution
2019-01-30
collection date
85.53
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0
%
contamination score
7
m
depth
adult coral tissue
environmental medium
Colombia
geographic location (country and/or sea)
12.52
DD
geographic location (latitude)
-81.03
DD
geographic location (longitude)
San Andres|West View
geographic location (region and locality)
Coral reef
habitat
adult
host life stage
Eunicea knighti
host scientific name
hermaphrodite
host sex
204324
host taxid
JUAN SANCHEZ
identified_by
UNIVERSIDAD DE LOS ANDES
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Eunicea knighti
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
18
number of standard tRNAs extracted
Metamycoplasmataceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735906
sample derived from
Metamycoplasmataceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0031401
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
2fa840d3-4724-4451-867f-1fd820e3f40a-asg-MAGScoT_cleanbin_000003
title
jaEunKnig1.Metamycoplasmataceae_2
tolid