PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23578517
SRA accession
a0ea1523-4a11-4e21-bf0b-8c96aeb47745
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
CRAWFORD DRURY
collected_by
Hawaii Institute of Marine Biology
collecting institution
2020-11-10
collection date
92.15
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.65
%
contamination score
12
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
21.29
DD
geographic location (latitude)
-157.93
DD
geographic location (longitude)
HAWAII | OAHU | KANEOHE BAY | RUNWAYREEF
geographic location (region and locality)
Reef Slope
habitat
adult
host life stage
Pocillopora grandis
host scientific name
hermaphrodite
host sex
2759717
host taxid
CRAWFORD DRURY
identified_by
Hawaii Institute of Marine Biology
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Pocillopora grandis
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
80
number of standard tRNAs extracted
Endozoicomonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735973
sample derived from
Endozoicomonas sp.
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000172
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
a0ea1523-4a11-4e21-bf0b-8c96aeb47745-asg-bin.31
title
jaPocGran1.Endozoicomonas_sp_1
tolid