PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23578165
SRA accession
45bdb99d-308b-426a-b2eb-aebf0fe01374
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Victor Bonito
collected_by
Reef Explorer Fiji
collecting institution
2021-06-30
collection date
96.13
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.81
%
contamination score
2
m
depth
adult coral tissue
environmental medium
Fiji
geographic location (country and/or sea)
-18.21
DD
geographic location (latitude)
177.69
DD
geographic location (longitude)
Viti Levu | Coral Coast
geographic location (region and locality)
reef flat moat
habitat
adult
host life stage
Pavona decussata
host scientific name
not applicable
host sex
227230
host taxid
Victor Bonito
identified_by
Reef Explorer Fiji
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Pavona decussata
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
38
number of standard tRNAs extracted
Ichthyobacteriaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
hammer, chisel, screw driver
sample collection method
SAMEA117735968
sample derived from
Ichthyobacteriaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000337
specimen_id
FJTOL-3
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
45bdb99d-308b-426a-b2eb-aebf0fe01374-asg-bin.25
title
jaPavDecu1.Ichthyobacteriaceae_1
tolid