PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23577340
SRA accession
e370887c-d2d7-4258-9f97-22c9eac0ef55
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOVA SOUTHEASTERN UNIVERSITY
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
NICHOLAS JONES
collected_by
NOVA SOUTHEASTERN UNIVERSITY
collecting institution
2021-07-02
collection date
67.74
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.08
%
contamination score
7.62
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
26.15
DD
geographic location (latitude)
-80.10
DD
geographic location (longitude)
Florida|Broward County|Broward County nearshore ridge habitat|Site BC1
geographic location (region and locality)
nearshore ridge
habitat
adult
host life stage
Muricea muricata
host scientific name
not applicable
host sex
204328
host taxid
JOE LOPEZ|NICHOLAS JONES
identified_by
NOVA SOUTHEASTERN UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Muricea muricata
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
39
number of standard tRNAs extracted
Alphaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735960
sample derived from
Alphaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0025901
specimen_id
N02-VII-2021-A
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
e370887c-d2d7-4258-9f97-22c9eac0ef55-asg-MAGScoT_cleanbin_000005
title
jaMurMuri3.Alphaproteobacteria_1
tolid