PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000047
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23581603
SRA accession
83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KYLIE PITT
collected_by
GRIFFITH UNIVERSITY
collecting institution
2022-02-15
collection date
98.95
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.3
%
contamination score
0
m
depth
adult jellyfish tissue
environmental medium
Australia
geographic location (country and/or sea)
-27.96
DD
geographic location (latitude)
153.42
DD
geographic location (longitude)
Queensland | Griffith Sea Jellies Research Laboratory
geographic location (region and locality)
Aquarium
habitat
adult
host life stage
Pseudorhiza aurosa
host scientific name
not collected
host sex
3286092
host taxid
KYLIE PITT
identified_by
GRIFFITH UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Pseudorhiza aurosa
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
86
number of standard tRNAs extracted
Endozoicomonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
Collected by dip net from aquarium
sample collection method
SAMEA117735996
sample derived from
Endozoicomonas sp.
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000501
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c-asg-MAGScoT_cleanbin_000001
title
jsPseHaec1.Endozoicomonas_sp_1
tolid