SAMN46872018
External Id
Fujian Agriculture and Forestry University
INSDC center name
2025-02-18T00:00:00Z
INSDC first public
2025-02-18T01:28:04.086Z
INSDC last update
live
INSDC status
Plant
NCBI submission model
Plant.1.0
NCBI submission package
3-5 years old
age
2020-12-01
collection_date
Bougainvillea glabra is an ornamental tree or shrub with nearly 200 years of application in gardening and landscapes globally. Recently, the growing research interest in the applications of B. glabra extracts, such as medicinal applications, and synthetic materials for nutraceuticals, has led to the development of new techniques to be utilized for studying B. glabra. Moreover, the formations of polymorphic coloration and the mechanism of metamorphic bracts in B. glabra cultivars are worthy of study. However, the genomic information for B. glabra is lacking completely which hinders the progress of gene-level research and genetic applications. We sequenced the bracts transcriptomes of 22 B. glabra accessions and generated 80.32 Gb clean data. After de novo assembly and optimization, 176,052 unigenes with E90N50 of 2,468bp and annotation data to six databases were obtained. In addition, a total of 117,246 CDSs were detected, and 36,739 SNPs were annotated in 68,509 unigenes. These transcriptome data are valuable for gene mining and expression profiling experiments or other scientific areas.
description
Mature bracts tissues were sampled on several branches from one individual for each of 22 accessions
dev_stage
Tissue samples were collected from cuttings (3-5 years old) of Bougainvillea glabra of 22 different cultivars or accessions grown in the nursery of the Yuanshan Institute of Bougainvillea in Longhai, in Zhangzhou city, China. Bract surface color features of 21 B. glabra accessions was measured for the apex, middle and base part of bract
ecotype
China: he nursery of the Yuanshan Institute of Bougainvillea in Longhai, in Zhangzhou city
geo_loc_name
Bougainvillea glabra
http://purl.obolibrary.org/obo/NCBITaxon_3541
organism
Mature bracts tissues
tissue
De novo transcriptomes of floral bracts for 22 Bougainvillea accessions
title