PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000047
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23578909
SRA accession
7f7a3de7-a49e-40b5-86ad-f5e16c375517
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
JUAN SANCHEZ
collected_by
UNIVERSIDAD DE LOS ANDES
collecting institution
2016-12-06
collection date
99.28
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.5
%
contamination score
15
m
depth
adult coral tissue
environmental medium
Colombia
geographic location (country and/or sea)
12.50
DD
geographic location (latitude)
-82.22
DD
geographic location (longitude)
San Adres Isla|Arenal Buconos
geographic location (region and locality)
Coral reef
habitat
adult
host life stage
Pterogorgia guadalupensis
host scientific name
hermaphrodite
host sex
1607761
host taxid
JUAN SANCHEZ
identified_by
UNIVERSIDAD DE LOS ANDES
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Pterogorgia guadalupensis
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
56
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735975
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
NSU0031701
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
7f7a3de7-a49e-40b5-86ad-f5e16c375517-asg-maxbin2.004
title
jaPteGuad1.Rhodococcus_qingshengii_1
tolid