PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23573234
SRA accession
d8384397-c009-4a8d-998d-8fc2b3580672
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Santiago Herrera
collected_by
Lehigh University
collecting institution
2021-08-12
collection date
71.9
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.01
%
contamination score
79.0
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
27.89
DD
geographic location (latitude)
-93.62
DD
geographic location (longitude)
Louisiana
geographic location (region and locality)
hardbottom
habitat
adult
host life stage
Antipathes furcata
host scientific name
not collected
host sex
795029
host taxid
Santiago Herrera
identified_by
Lehigh University
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Antipathes furcata
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
33
number of standard tRNAs extracted
Spiroplasma sp.
organism
WHOLE ORGANISM
organism part
2021-08-12
original collection date
USA|Louisiana
original collection location
27.89072
DD
original geographic location (latitude)
-93.6197
DD
original geographic location (longitude)
ASG
project name
NOT PROVIDED
proxy voucher
https://collections.nmnh.si.edu/search/iz/
proxy voucher url
ROV
sample collection method
SAMEA117735854
sample derived from
Spiroplasma sp.
scientific_name
Pacbio Sequel II
sequencing method
https://collections.nmnh.si.edu/search/iz/
specimen voucher url
UDUK1665764
specimen_id
USNM:1665764
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
d8384397-c009-4a8d-998d-8fc2b3580672-asg-bin.58
title
jaAntFurc1.Spiroplasma_sp_1
tolid
https://ror.org/00cz47042
voucher institution url