PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23574830
SRA accession
d2f87550-5f42-4c39-bcce-8606ea3be2ee
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOVA SOUTHEASTERN UNIVERSITY
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
JOE LOPEZ
collected_by
NOVA SOUTHEASTERN UNIVERSITY
collecting institution
2021-06-28
collection date
87.89
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.59
%
contamination score
11.0
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
26.15
DD
geographic location (latitude)
-80.10
DD
geographic location (longitude)
Florida|Broward County|Broward County nearshore ridge habitat
geographic location (region and locality)
nearshore ridge
habitat
adult
host life stage
Eunicea succinea
host scientific name
not applicable
host sex
287898
host taxid
JOE LOPEZ|NICHOLAS JONES
identified_by
NOVA SOUTHEASTERN UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Eunicea succinea
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
88
number of standard tRNAs extracted
Endozoicomonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735910
sample derived from
Endozoicomonas sp.
scientific_name
Pacbio Sequel II
sequencing method
NSU0025801
specimen_id
N28-VI-2021-C
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
d2f87550-5f42-4c39-bcce-8606ea3be2ee-asg-MAGScoT_cleanbin_000004
title
jaEunSucc3.Endozoicomonas_sp_1
tolid