PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23585823
SRA accession
012849b5-2241-40be-830f-5da435c7221b
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Santiago Herrera
collected_by
Lehigh University
collecting institution
2021-08-15
collection date
88.8
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.47
%
contamination score
531.0
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
27.60
DD
geographic location (latitude)
-91.83
DD
geographic location (longitude)
Louisiana
geographic location (region and locality)
hardbottom
habitat
adult
host life stage
Sibopathes sp. 1 SH 2022
host scientific name
not collected
host sex
3024256
host taxid
Santiago Herrera
identified_by
Lehigh University
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Sibopathes sp. 1 SH 2022
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
89
number of standard tRNAs extracted
Endozoicomonadaceae bacterium
organism
WHOLE ORGANISM
organism part
2021-08-15
original collection date
USA|Louisiana
original collection location
27.59675
DD
original geographic location (latitude)
-91.8256
DD
original geographic location (longitude)
ASG
project name
NOT PROVIDED
proxy voucher
https://collections.nmnh.si.edu/search/iz/
proxy voucher url
ROV
sample collection method
SAMEA117736320
sample derived from
Endozoicomonadaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
https://collections.nmnh.si.edu/search/iz/
specimen voucher url
UDUK1665769
specimen_id
USNM:1665769
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
012849b5-2241-40be-830f-5da435c7221b-asg-MAGScoT_cleanbin_000002
title
jaSibSpea1.Endozoicomonadaceae_1
tolid
https://ror.org/00cz47042
voucher institution url