PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23580173
SRA accession
a4fbb147-7ccf-497d-b27d-9cb3c8022b9b
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Michael Dawson
collected_by
UC Merced
collecting institution
2022-07-30
collection date
84.55
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.88
%
contamination score
4
m
depth
adult hydrozoan tissue
environmental medium
Palau
geographic location (country and/or sea)
7.33
DD
geographic location (latitude)
134.43
DD
geographic location (longitude)
Koror | Hafa Adai Reef
geographic location (region and locality)
Reef
habitat
adult
host life stage
Millepora dichotoma
host scientific name
not collected
host sex
544484
host taxid
Michael Dawson
identified_by
UC Merced
identifier_affiliation
metagenome-assembled genome
investigation type
Hydrozoan: Millepora dichotoma
isolation_source
marine biome
local environmental context
hydrozoan metagenome
metagenomic source
39
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
2022-07-30
original collection date
Palau | Koror | Hafa Adai Reef
original collection location
7.3253
DD
original geographic location (latitude)
134.4318
DD
original geographic location (longitude)
ASG
project name
by hand
sample collection method
SAMEA117735993
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000020
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
a4fbb147-7ccf-497d-b27d-9cb3c8022b9b-asg-MAGScoT_cleanbin_000003
title
jhMilDich1.Gammaproteobacteria_1
tolid