PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23573681
SRA accession
1afc3f5f-edbe-4deb-a6cd-68b3152bf72a
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Wiedenmann | D'Angelo
collected_by
UoS | UoS
collecting institution
2023-10-18
collection date
67.44
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.42
%
contamination score
0.1
m
depth
adult coral tissue
environmental medium
United Kingdom
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
University of Derby
geographic location (region and locality)
Aquarium
habitat
adult
host life stage
Duncanopsammia axifuga
host scientific name
not provided
host sex
1479653
host taxid
D'Angelo | Wiedennmann
identified_by
UoS | Uos / NYUAD
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Duncanopsammia axifuga
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
31
number of standard tRNAs extracted
Flavobacteriaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735858
sample derived from
Flavobacteriaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK1666388
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
1afc3f5f-edbe-4deb-a6cd-68b3152bf72a-asg-bin.142
title
jaDunAxif1.Flavobacteriaceae_1
tolid