PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000047
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23580174
SRA accession
010b93be-813f-46dc-a98d-a513e131c8f0
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Michael Dawson
collected_by
UC Merced
collecting institution
2022-07-30
collection date
98.06
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.79
%
contamination score
4
m
depth
adult hydrozoan tissue
environmental medium
Palau
geographic location (country and/or sea)
7.33
DD
geographic location (latitude)
134.43
DD
geographic location (longitude)
Koror | Hafa Adai Reef
geographic location (region and locality)
Reef
habitat
adult
host life stage
Millepora dichotoma
host scientific name
not collected
host sex
544484
host taxid
Michael Dawson
identified_by
UC Merced
identifier_affiliation
metagenome-assembled genome
investigation type
Hydrozoan: Millepora dichotoma
isolation_source
marine biome
local environmental context
hydrozoan metagenome
metagenomic source
47
number of standard tRNAs extracted
Pseudomonadales bacterium
organism
WHOLE ORGANISM
organism part
2022-07-30
original collection date
Palau | Koror | Hafa Adai Reef
original collection location
7.3253
DD
original geographic location (latitude)
134.4318
DD
original geographic location (longitude)
ASG
project name
by hand
sample collection method
SAMEA117735993
sample derived from
Pseudomonadales bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000020
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
010b93be-813f-46dc-a98d-a513e131c8f0-asg-MAGScoT_cleanbin_000001
title
jhMilDich1.Pseudomonadales_1
tolid