PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000047
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23586898
SRA accession
5cf7e630-7e9e-45f7-9d39-4316c93ef08e
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Michael Dawson
collected_by
UC Merced
collecting institution
2022-06-08
collection date
98.78
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
4.73
%
contamination score
2.0
m
depth
adult jellyfish tissue
environmental medium
Palau
geographic location (country and/or sea)
7.30
DD
geographic location (latitude)
134.48
DD
geographic location (longitude)
Koror | Lee Marvin Cove
geographic location (region and locality)
Cove
habitat
adult
host life stage
Cassiopea ornata
host scientific name
male
host sex
880217
host taxid
Michael Dawson
identified_by
UC Merced
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Cassiopea ornata
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
83
number of standard tRNAs extracted
Endozoicomonas atrinae
organism
WHOLE ORGANISM
organism part
2022-06-08
original collection date
Palau | Koror | Lee Marvin Cove
original collection location
7.3034
DD
original geographic location (latitude)
134.4825
DD
original geographic location (longitude)
ASG
project name
by hand
sample collection method
SAMEA117736329
sample derived from
Endozoicomonas atrinae
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000031
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
5cf7e630-7e9e-45f7-9d39-4316c93ef08e-asg-bin.38
title
jsCasOrna3.Endozoicomonas_atrinae_1
tolid