PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23579232
SRA accession
d3f47707-15f8-4749-8cbd-8d253f3b0a7b
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
RICHARD KARP
collected_by
UNIVERSITY OF MIAMI
collecting institution
2021-03-30
collection date
60.34
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
2
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
25.68
DD
geographic location (latitude)
-80.17
DD
geographic location (longitude)
FLORIDA | MIAMI | BILL BAGGS
geographic location (region and locality)
Inshore rip rap
habitat
adult
host life stage
Siderastrea radians
host scientific name
not collected
host sex
214988
host taxid
RICHARD KARP
identified_by
UNIVERSITY OF MIAMI
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Siderastrea radians
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
23
number of standard tRNAs extracted
Flammeovirgaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735978
sample derived from
Flammeovirgaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000164
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
d3f47707-15f8-4749-8cbd-8d253f3b0a7b-asg-bin.58
title
jaSidRadi1.Flammeovirgaceae_1
tolid