PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23575945
SRA accession
c6d8f441-3c4b-4160-8c7e-0f54cd5357bf
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Michael Sweet
collected_by
University of Derby
collecting institution
2023-10-18
collection date
49.73
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
8.88
%
contamination score
1900-11-21T00:00:00.000
culture_or_strain_id
adult coral tissue
environmental medium
United Kingdom
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
University of Derby
geographic location (region and locality)
Aquarium
habitat
adult
host life stage
Montipora palawanensis
host scientific name
not provided
host sex
3109268
host taxid
Jamie Craggs
identified_by
Horniman Museum
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Montipora palawanensis
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
37
number of standard tRNAs extracted
Amphritea sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117735926
sample derived from
Amphritea sp.
scientific_name
Pacbio Sequel II
sequencing method
UDUK1666460
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
c6d8f441-3c4b-4160-8c7e-0f54cd5357bf-asg-MAGScoT_cleanbin_000009
title
jaMonPala1.Amphritea_sp_1
tolid