PROKKA (version 1.14.6)
16S recovery software
No
16s recovered
2025-02-19
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23576960
SRA accession
53d4c64c-4588-48c0-b23a-034d3f754c47
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
JUAN SANCHEZ
collected_by
UNIVERSIDAD DE LOS ANDES
collecting institution
2018-06-15
collection date
48.0
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.6
%
contamination score
35
m
depth
adult coral tissue
environmental medium
Colombia
geographic location (country and/or sea)
10.26
DD
geographic location (latitude)
-75.62
DD
geographic location (longitude)
Cartagena|Bajo La Montañita
geographic location (region and locality)
Coral reef
habitat
adult
host life stage
Muricea laxa
host scientific name
hermaphrodite
host sex
287906
host taxid
JUAN SANCHEZ
identified_by
UNIVERSIDAD DE LOS ANDES
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Muricea laxa
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
17
number of standard tRNAs extracted
Spirochaetota bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735943
sample derived from
Spirochaetota bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0031505
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
53d4c64c-4588-48c0-b23a-034d3f754c47-asg-MAGScoT_cleanbin_000021
title
jaMurLaxa5.Spirochaetota_1
tolid