PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-19
ENA first public
ERC000047
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23579774
SRA accession
f89795cd-9514-48d2-9c89-f43af724eea4
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ABIGAIL RENEGAR
collected_by
NOVA SOUTHEASTERN UNIVERSITY
collecting institution
2018-10-15
collection date
100
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0
%
contamination score
2021-08-06 00:00:00
m
depth
adult coral tissue
environmental medium
USA
geographic location (country and/or sea)
26.16
DD
geographic location (latitude)
-80.10
DD
geographic location (longitude)
Florida|Offshore Ft. Lauderdale
geographic location (region and locality)
Nearshore reef complex, colonized hardbottom, nearshore ridge complex
habitat
adult
host life stage
Stephanocoenia intersepta
host scientific name
not collected
host sex
504342
host taxid
ABIGAIL RENEGAR
identified_by
NOVA SOUTHEASTERN UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Stephanocoenia intersepta
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
34
number of standard tRNAs extracted
Candidatus Aquarickettsia rohweri
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117735981
sample derived from
Candidatus Aquarickettsia rohweri
scientific_name
Pacbio Sequel II
sequencing method
NSU0021903
specimen_id
NSU21901-v
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
f89795cd-9514-48d2-9c89-f43af724eea4-asg-MAGScoT_cleanbin_000001
title
jaSteInte3.Aquarickettsia_rohweri_1
tolid