PROKKA (version 1.14.6)
16S recovery software
No
16s recovered
2025-02-20
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23681030
SRA accession
b3ef3d74-a06f-4f1d-bd89-a4b310ebceaa
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
SALLY LEYS
collected_by
University of Alberta
collecting institution
2024-04-02
collection date
30.71
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.75
%
contamination score
1
m
depth
adult sponge tissue
environmental medium
Canada
geographic location (country and/or sea)
48.83
DD
geographic location (latitude)
-125.14
DD
geographic location (longitude)
BRITISH COLUMBIA | BAMFIELD | BAMFIELD MARINE SCIENCES CENTRE
geographic location (region and locality)
INTERTIDAL/SUBTIDAL/ROCK/DOCK EXPOSED AND SHELTERED
habitat
adult
host life stage
Haliclona cinerea
host scientific name
not collected
host sex
178541
host taxid
SALLY LEYS
identified_by
University of Alberta
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Haliclona cinerea
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
12
number of standard tRNAs extracted
Pseudomonadales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117740028
sample derived from
Pseudomonadales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000352
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
b3ef3d74-a06f-4f1d-bd89-a4b310ebceaa-asg-bin.11
title
odHalCine1.Pseudomonadales_1
tolid