PROKKA (version 1.14.6)
16S recovery software
No
16s recovered
2025-02-25
ENA first public
ERC000050
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23747683
SRA accession
51eb42bf-5e2b-491b-bc27-798ce73b27ab
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
SHUHEI IKEDA
collected_by
TSURUOKA CITY KAMO AQUARIUM
collecting institution
2022-02-02
collection date
80.7
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
8.64
%
contamination score
adult ctenophore tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
44.10
DD
geographic location (latitude)
144.19
DD
geographic location (longitude)
JAPAN | NEAR ABASHIRI | ENTRANCE TO LAKE NOTORO | FISHING PORT
geographic location (region and locality)
WATER COLUMN
habitat
adult
host life stage
Mertensia ovum
host scientific name
not provided
host sex
140496
host taxid
Dhugal Lindsay
identified_by
JAMSTEC
identifier_affiliation
metagenome-assembled genome
investigation type
Ctenophore: Mertensia ovum
isolation_source
marine biome
local environmental context
ctenophore metagenome
metagenomic source
31
number of standard tRNAs extracted
Yoonia sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SCOOP
sample collection method
SAMEA117761957
sample derived from
Yoonia sp.
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000209
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
51eb42bf-5e2b-491b-bc27-798ce73b27ab-asg-MAGScoT_cleanbin_000049
title
jtMerOvum1.Yoonia_sp_1
tolid