PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-26
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23760903
SRA accession
93e7c0c4-d886-48a1-9987-9ca718928a3d
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-08-03
collection date
69.93
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
6.17
%
contamination score
2113
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
continental shelf
habitat
adult
host life stage
Geodia macandrewii
host scientific name
not applicable
host sex
519544
host taxid
HANS TORE RAPP
identified_by
UiB, Norway
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Geodia macandrewii
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
158
number of standard tRNAs extracted
Pseudomonadales bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
beneficial
relationship
SAMEA117775059
sample derived from
Pseudomonadales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000288
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
93e7c0c4-d886-48a1-9987-9ca718928a3d-asg-MAGScoT_cleanbin_000090
title
odGeoMaca1.Pseudomonadales_1
tolid