PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-26
ENA first public
ERC000047
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23760351
SRA accession
e6fbb2cf-b590-4302-8a68-6556a63926d3
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
SHUHEI IKEDA
collected_by
TSURUOKA CITY KAMO AQUARIUM
collecting institution
2022-04-13
collection date
100
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
adult ctenophore tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
33.95
DD
geographic location (latitude)
132.44
DD
geographic location (longitude)
JAPAN | YAMAGUCHI | OSHIMA DISTRICT | SUOOSHIMA | IN FRONT OF NAGISA AQUARIUM
geographic location (region and locality)
WATER COLUMN
habitat
adult
host life stage
Bolinopsis mikado
host scientific name
not provided
host sex
2516999
host taxid
Dhugal Lindsay
identified_by
JAMSTEC
identifier_affiliation
metagenome-assembled genome
investigation type
Ctenophore: Bolinopsis mikado
isolation_source
marine biome
local environmental context
ctenophore metagenome
metagenomic source
40
number of standard tRNAs extracted
Fangia hongkongensis
organism
WHOLE ORGANISM
organism part
ASG
project name
SCOOP
sample collection method
SAMEA117774630
sample derived from
Fangia hongkongensis
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000207
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
e6fbb2cf-b590-4302-8a68-6556a63926d3-asg-bin.11
title
jtBolMika1.Fangia_hongkongensis_1
tolid