PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-26
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23760941
SRA accession
9bbadff6-95af-45e8-a95d-a3ad42c5f2f9
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
DANIEL RODRIGUES
collected_by
NUIG
collecting institution
2019-08-01
collection date
93.48
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
6.48
%
contamination score
2021-08-06 00:00:00
m
depth
adult sponge tissue
environmental medium
Ireland
geographic location (country and/or sea)
52.59
DD
geographic location (latitude)
-9.87
DD
geographic location (longitude)
Co. Clare | Bridges of Ross
geographic location (region and locality)
SUBTIDAL
habitat
adult
host life stage
Haliclona viscosa
host scientific name
not applicable
host sex
608221
host taxid
KENETH SANDOVAL
identified_by
NUIG, IRELAND
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Haliclona viscosa
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
62
number of standard tRNAs extracted
Endozoicomonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
UNKNOWN
relationship
SAMEA117775220
sample derived from
Endozoicomonas sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000047
specimen_id
MIIG1389
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
9bbadff6-95af-45e8-a95d-a3ad42c5f2f9-asg-MAGScoT_cleanbin_000002
title
odHalVisc2.Endozoicomonas_sp_1
tolid