PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-26
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23760745
SRA accession
74544f15-c51a-41b5-baed-e19f4d09bc16
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ANDIA CHAVES FONNEGRA
collected_by
FLORIDA ATLANTIC UNIVERSITY
collecting institution
2020-12-16
collection date
70.46
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
2.4
m
depth
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
26.14
DD
geographic location (latitude)
-80.10
DD
geographic location (longitude)
Florida|Broward County|Offshore Fort Lauderdale
geographic location (region and locality)
Coral reef
habitat
adult
host life stage
Cliona delitrix
host scientific name
male
host sex
283504
host taxid
ANDIA CHAVES FONNEGRA
identified_by
FLORIDA ATLANTIC UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Cliona delitrix
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
39
number of standard tRNAs extracted
Candidatus Latescibacterota bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117774996
sample derived from
Candidatus Latescibacterota bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000168
specimen_id
CL110(86)
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
74544f15-c51a-41b5-baed-e19f4d09bc16-asg-MAGScoT_cleanbin_000062
title
odCliDeli1.Latescibacterota_1
tolid