PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-26
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23760916
SRA accession
99fda0a5-85d9-418a-8fd5-750ac8318952
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-08-03
collection date
93.8
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.76
%
contamination score
2113
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
continental shelf
habitat
adult
host life stage
Geodia macandrewii
host scientific name
not applicable
host sex
519544
host taxid
HANS TORE RAPP
identified_by
UiB, Norway
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Geodia macandrewii
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
52
number of standard tRNAs extracted
Acidobacteriota bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
beneficial
relationship
SAMEA117775059
sample derived from
Acidobacteriota bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000288
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
99fda0a5-85d9-418a-8fd5-750ac8318952-asg-MAGScoT_cleanbin_000030
title
odGeoMaca1.Acidobacteriota_2
tolid