PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-26
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23761001
SRA accession
c90e3816-5dd1-418a-90d5-afbd76414709
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Andia Chaves Fonnegra
collected_by
FLORIDA ATLANTIC UNIVERSITY
collecting institution
2024-02-29
collection date
83.09
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.22
%
contamination score
14.3
m
depth
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
26.16
DD
geographic location (latitude)
-80.08
DD
geographic location (longitude)
Florida | Fort Lauderdale | BC2
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Niphates erecta
host scientific name
not applicable
host sex
458509
host taxid
Andia Chaves Fonnegra
identified_by
FLORIDA ATLANTIC UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Niphates erecta
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
52
number of standard tRNAs extracted
Candidatus Amphirhobacter sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
unknown
relationship
SAMEA117775276
sample derived from
Candidatus Amphirhobacter sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000346
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
c90e3816-5dd1-418a-90d5-afbd76414709-asg-MAGScoT_cleanbin_000002
title
odNipErec3.Amphirhobacter_sp_1
tolid