PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-26
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23760586
SRA accession
f8bda5a5-7022-4204-9cdc-196a94cbeb23
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Andia Chaves Fonnegra
collected_by
FLORIDA ATLANTIC UNIVERSITY
collecting institution
2024-02-29
collection date
96.59
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
14.3
m
depth
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
26.16
DD
geographic location (latitude)
-80.08
DD
geographic location (longitude)
Florida | Fort Lauderdale | BC2
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Aiolochroia crassa
host scientific name
not applicable
host sex
261677
host taxid
Andia Chaves Fonnegra
identified_by
FLORIDA ATLANTIC UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Aiolochroia crassa
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
61
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
unknown
relationship
SAMEA117774750
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000341
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
f8bda5a5-7022-4204-9cdc-196a94cbeb23-asg-MAGScoT_cleanbin_000076
title
odAioCras1.Dehalococcoidia_10
tolid