PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-27
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23766880
SRA accession
988bfccd-3f86-43f9-a3c1-69845a0f5bc7
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Lennart Melson
collected_by
GEOMAR
collecting institution
2024-02-21
collection date
98.72
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
1
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
aquarium
habitat
adult
host life stage
Haliclona cnidata
host scientific name
not applicable
host sex
2488703
host taxid
Lennart Melson
identified_by
GEOMAR
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Haliclona cnidata
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
50
number of standard tRNAs extracted
bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
unknown
relationship
SAMEA117781122
sample derived from
bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000320
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
988bfccd-3f86-43f9-a3c1-69845a0f5bc7-asg-MAGScoT_cleanbin_000032
title
odHalCnid1.Bacteria_1
tolid