PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-27
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23766315
SRA accession
4e600c2f-36c9-42fe-ba98-7bf1f9fe268c
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2018-08-08
collection date
90.8
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
6.72
%
contamination score
330
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
continental shelf
habitat
adult
host life stage
Geodia phlegraei
host scientific name
not applicable
host sex
521093
host taxid
HANS TORE RAPP
identified_by
UiB, Norway
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Geodia phlegraei
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
37
number of standard tRNAs extracted
Rhodospirillales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
beneficial
relationship
SAMEA117780466
sample derived from
Rhodospirillales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000289
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
4e600c2f-36c9-42fe-ba98-7bf1f9fe268c-asg-bin.977
title
odGeoPhle1.Rhodospirillales_2
tolid