PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-27
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23766691
SRA accession
070fecc5-3374-48e6-9a35-ae9a8c0c741d
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Andia Chaves Fonnegra
collected_by
FLORIDA ATLANTIC UNIVERSITY
collecting institution
2024-02-29
collection date
94.17
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
9.19
%
contamination score
14.3
m
depth
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
26.16
DD
geographic location (latitude)
-80.08
DD
geographic location (longitude)
Florida | Fort Lauderdale | BC2
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Agelas tubulata
host scientific name
not applicable
host sex
333315
host taxid
Andia Chaves Fonnegra
identified_by
FLORIDA ATLANTIC UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Agelas tubulata
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
49
number of standard tRNAs extracted
Cenarchaeum sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
unknown
relationship
SAMEA117780969
sample derived from
Cenarchaeum sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000345
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
070fecc5-3374-48e6-9a35-ae9a8c0c741d-asg-MAGScoT_cleanbin_000112
title
odAgeTubu1.Cenarchaeum_sp_2
tolid