PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-27
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23765962
SRA accession
bb78a054-c11f-402e-99ed-1e65598931da
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-06-12
collection date
99.0
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
5.47
%
contamination score
660
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
rock
habitat
adult
host life stage
Calthropella geodioides
host scientific name
not applicable
host sex
1006834
host taxid
PILAR RÌOS
identified_by
IEO, Spain
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Calthropella geodioides
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
69
number of standard tRNAs extracted
Alphaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
unknown
relationship
SAMEA117780117
sample derived from
Alphaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000301
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
bb78a054-c11f-402e-99ed-1e65598931da-asg-MAGScoT_cleanbin_000020
title
odCalGeod1.Alphaproteobacteria_7
tolid