PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-27
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23766175
SRA accession
13cb826b-2a61-4f5c-a39f-980ae7229d00
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
SALLY LEYS
collected_by
University of Alberta
collecting institution
2023-07-24
collection date
Mueller's freshwater sponge
common name
51.04
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
5.73
%
contamination score
adult sponge tissue
environmental medium
Canada
geographic location (country and/or sea)
53.53
DD
geographic location (latitude)
-113.53
DD
geographic location (longitude)
ALBERTA | UNIVERSITY OF ALBERTA | CCIS5-090
geographic location (region and locality)
STERILE CULTURE OF STREKALS MEDIUM IN THE LAB
habitat
juvenile
host life stage
Ephydatia muelleri
host scientific name
not collected
host sex
6052
host taxid
SALLY LEYS
identified_by
University of Alberta
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Ephydatia muelleri
isolation_source
freshwater biome
local environmental context
sponge metagenome
metagenomic source
30
number of standard tRNAs extracted
Candidatus Aldehydirespiratoraceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117780420
sample derived from
Candidatus Aldehydirespiratoraceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000277
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
13cb826b-2a61-4f5c-a39f-980ae7229d00-asg-MAGScoT_cleanbin_000062
title
odEphMuel1.Aldehydirespiratoraceae_2
tolid