PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-02-27
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23766918
SRA accession
3453cb5d-7957-4748-9093-040d5c9c075f
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Andia Chaves Fonnegra
collected_by
FLORIDA ATLANTIC UNIVERSITY
collecting institution
2024-02-29
collection date
84.62
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
14.3
m
depth
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
26.16
DD
geographic location (latitude)
-80.08
DD
geographic location (longitude)
Florida | Fort Lauderdale | BC2
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Ircinia felix
host scientific name
not applicable
host sex
275432
host taxid
Andia Chaves Fonnegra
identified_by
FLORIDA ATLANTIC UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Ircinia felix
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
48
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
unknown
relationship
SAMEA117781173
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000349
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
3453cb5d-7957-4748-9093-040d5c9c075f-asg-MAGScoT_cleanbin_000104
title
odIrcFeli1.Dehalococcoidia_16
tolid