PROKKA (version 1.14.6)
16S recovery software
No
16s recovered
2025-02-27
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23766131
SRA accession
b90b0bb7-862f-4abc-8eef-478a919de97d
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
WILLIAM GROSSMAN
collected_by
MARINE BIOLOGICAL LABORATORY
collecting institution
2024-04-10
collection date
90.85
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
7.01
%
contamination score
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
41.57
DD
geographic location (latitude)
-70.70
DD
geographic location (longitude)
Massachusettes | East Falmouth
geographic location (region and locality)
under a culvert bridge in 2' of water that has mostly sand and a few rocks. The area has good tidal flow.
habitat
juvenile
host life stage
Clathria prolifera
host scientific name
not provided
host sex
1190602
host taxid
WILLIAM GROSSMAN
identified_by
MARINE BIOLOGICAL LABORATORY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Clathria prolifera
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
33
number of standard tRNAs extracted
Candidatus Poriferihabitans sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117780399
sample derived from
Candidatus Poriferihabitans sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000353
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
b90b0bb7-862f-4abc-8eef-478a919de97d-asg-MAGScoT_cleanbin_000003
title
odClaProl1.Poriferihabitans_sp_1
tolid