PROKKA (version 1.14.6)
16S recovery software
No
16s recovered
2025-02-27
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23766450
SRA accession
ded7b873-e051-4e09-86cf-bc6bdf6da9dd
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
WILLIAM GROSSMAN
collected_by
MARINE BIOLOGICAL LABORATORY
collecting institution
2024-05-20
collection date
13.19
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
41.63
DD
geographic location (latitude)
-70.64
DD
geographic location (longitude)
Massachusettes | North Falmouth
geographic location (region and locality)
collected under a bridge, ~2 ' of water, fast water moving through there during tides, 53F
habitat
juvenile
host life stage
Mycale fibrexilis
host scientific name
not provided
host sex
86016
host taxid
WILLIAM GROSSMAN
identified_by
MARINE BIOLOGICAL LABORATORY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Mycale fibrexilis
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
6
number of standard tRNAs extracted
Nitrospinales bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117780715
sample derived from
Nitrospinales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000358
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
ded7b873-e051-4e09-86cf-bc6bdf6da9dd-asg-bin.211
title
odMycFibr1.Nitrospinales_2
tolid