PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-03
ENA first public
ERC000050
ENA-CHECKLIST
University of British Columbia
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23775516
SRA accession
a93f1202-ab93-49b7-b5cc-ea7e34d28a1f
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF BRITISH COLUMBIA
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
CLAUDIA VANNINI
collected_by
University of Pisa
collecting institution
2023-08-10
collection date
97.8
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.55
%
contamination score
Eoc2
culture_or_strain_id
ciliate culture
environmental medium
Italy
geographic location (country and/or sea)
43.72
DD
geographic location (latitude)
10.40
DD
geographic location (longitude)
Pisa
geographic location (region and locality)
Laboratory culture
habitat
vegetative cell
host life stage
Euplotes octocarinatus
host scientific name
not applicable
host sex
2716877
host taxid
VITTORIO BOSCARO
identified_by
University of British Columbia
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Euplotes octocarinatus
isolation_source
freshwater biome
local environmental context
ciliate metagenome
metagenomic source
39
number of standard tRNAs extracted
Candidatus Anadelfobacter sociabilis
organism
WHOLE ORGANISM
organism part
ASG
project name
Harvested by centrifugation
sample collection method
SAMEA117789328
sample derived from
Candidatus Anadelfobacter sociabilis
scientific_name
Pacbio Sequel II
sequencing method
UOBC0000073
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
a93f1202-ab93-49b7-b5cc-ea7e34d28a1f-asg-bin.102
title
piEupOcto1.Anadelfobacter_sociabilis_1
tolid