PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-03
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23775106
SRA accession
e560af15-dafa-4240-b88f-c1fd436db019
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-02-07
collection date
90.62
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
7.31
%
contamination score
1172
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
ridge
habitat
adult
host life stage
Penares turmericolor
host scientific name
not applicable
host sex
3121256
host taxid
SADIE MILLS
identified_by
NIWA, New Zealand
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Penares turmericolor
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
49
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
unknown
relationship
SAMEA117788891
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000304
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
e560af15-dafa-4240-b88f-c1fd436db019-asg-MAGScoT_cleanbin_000075
title
odPenTurm1.Gammaproteobacteria_5
tolid