PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-04
ENA first public
ERC000047
ENA-CHECKLIST
University of British Columbia
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23777521
SRA accession
d5e4265f-a358-4786-9086-93a4549b7058
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF BRITISH COLUMBIA
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
CLAUDIA VANNINI
collected_by
University of Pisa
collecting institution
2023-08-10
collection date
98.29
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
4.84
%
contamination score
Eae2
culture_or_strain_id
ciliate culture
environmental medium
Italy
geographic location (country and/or sea)
43.72
DD
geographic location (latitude)
10.40
DD
geographic location (longitude)
Pisa
geographic location (region and locality)
Laboratory culture
habitat
vegetative cell
host life stage
Euplotes aediculatus
host scientific name
not applicable
host sex
5940
host taxid
VITTORIO BOSCARO
identified_by
University of British Columbia
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Euplotes aediculatus
isolation_source
freshwater biome
local environmental context
ciliate metagenome
metagenomic source
72
number of standard tRNAs extracted
Candidatus Obscuribacterales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Harvested by centrifugation
sample collection method
SAMEA117791313
sample derived from
Candidatus Obscuribacterales bacterium
scientific_name
Pacbio Sequel II
sequencing method
UOBC0000071
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
d5e4265f-a358-4786-9086-93a4549b7058-asg-MAGScoT_cleanbin_000019
title
piEupAedi2.Obscuribacterales_1
tolid