PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-06
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23781746
SRA accession
b3dd54e5-0807-484d-800a-14aedcd87f50
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-02-02
collection date
87.18
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.09
%
contamination score
495
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
volcano
habitat
adult
host life stage
Pleroma turbinatum
host scientific name
not applicable
host sex
2593556
host taxid
SADIE MILLS
identified_by
NIWA, New Zealand
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Pleroma turbinatum
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
48
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
unknown
relationship
SAMEA117795558
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000316
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
b3dd54e5-0807-484d-800a-14aedcd87f50-asg-MAGScoT_cleanbin_000001
title
odPleTurb1.Gammaproteobacteria_1
tolid