PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23810099
SRA accession
90dbc8ab-17ce-419e-8267-fc58b4fb0fa1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
JOHN PETTINGILL
collected_by
NOVA SOUTHEASTERN UNIVERSITY
collecting institution
2020-07-30
collection date
77.63
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.09
%
contamination score
1.5
m
depth
adult chlorophyte tissue
environmental medium
USA
geographic location (country and/or sea)
25.03
DD
geographic location (latitude)
-80.50
DD
geographic location (longitude)
Florida | Key Largo | Dove Cove
geographic location (region and locality)
Limestone Mangrove Channel
habitat
not applicable
host life stage
Penicillus capitatus
host scientific name
not applicable
host sex
170435
host taxid
JOHN PETTINGILL
identified_by
NOVA SOUTHEASTERN UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Chlorophyte: Penicillus capitatus
isolation_source
marine biome
local environmental context
algae metagenome
metagenomic source
39
number of standard tRNAs extracted
Marinicellaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117820338
sample derived from
Marinicellaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0025201
specimen_id
NSU25201
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
90dbc8ab-17ce-419e-8267-fc58b4fb0fa1-asg-MAGScoT_cleanbin_000104
title
ucPenCapi1.Marinicellaceae_1
tolid