PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-12
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23804814
SRA accession
393ab743-987d-4544-b307-3c1bcb44e000
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Manuel Maldonado
collected_by
CEAB-CSIC
collecting institution
2021-02-01
collection date
95.35
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.58
%
contamination score
11
m
depth
adult sponge tissue
environmental medium
Spain
geographic location (country and/or sea)
41.67
DD
geographic location (latitude)
2.80
DD
geographic location (longitude)
Girona|Blanes
geographic location (region and locality)
rocky bottom
habitat
adult
host life stage
Sarcotragus fasciculatus
host scientific name
not applicable
host sex
1234657
host taxid
Manuel Maldonado
identified_by
CEAB-CSIC
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Sarcotragus fasciculatus
isolation_source
marine benthic biome
local environmental context
sponge metagenome
metagenomic source
37
number of standard tRNAs extracted
Coxiellaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
beneficial
relationship
SAMEA117815066
sample derived from
Coxiellaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000186
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
393ab743-987d-4544-b307-3c1bcb44e000-asg-MAGScoT_cleanbin_000044
title
odSarFasc1.Coxiellaceae_1
tolid