PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-12
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23804863
SRA accession
365b28c7-37bf-44be-8844-83d13bd48baf
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
SALLY LEYS
collected_by
University of Alberta
collecting institution
2024-04-02
collection date
86.85
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
4.11
%
contamination score
15
m
depth
adult sponge tissue
environmental medium
Canada
geographic location (country and/or sea)
48.83
DD
geographic location (latitude)
-125.14
DD
geographic location (longitude)
BRITISH COLUMBIA | BAMFIELD | BAMFIELD MARINE SCIENCES CENTRE
geographic location (region and locality)
SUBTIDAL ROCK EXPOSED
habitat
adult
host life stage
Tethya californiana
host scientific name
not collected
host sex
283519
host taxid
SALLY LEYS
identified_by
University of Alberta
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Tethya californiana
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
37
number of standard tRNAs extracted
Luminiphilus sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117815210
sample derived from
Luminiphilus sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000350
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
365b28c7-37bf-44be-8844-83d13bd48baf-asg-MAGScoT_cleanbin_000010
title
odTetCali1.Luminiphilus_sp_1
tolid