PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000047
ENA-CHECKLIST
University of British Columbia
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23810205
SRA accession
1b7baf7f-a1bb-461f-a1bd-400e2722d697
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Estelle Kilias
collected_by
University of Oxford
collecting institution
2023-01-25
collection date
98.14
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.87
%
contamination score
1660/25
culture_or_strain_id
ciliate culture
environmental medium
United Kingdom
geographic location (country and/or sea)
51.76
DD
geographic location (latitude)
-1.25
DD
geographic location (longitude)
Oxford|Zoology Department
geographic location (region and locality)
Freshwater
habitat
not applicable
host life stage
Paramecium tetratobursaria
host scientific name
not applicable
host sex
3029280
host taxid
NOT COLLECTED
identified_by
CCAP
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Paramecium tetratobursaria
isolation_source
freshwater biome
local environmental context
ciliate metagenome
metagenomic source
53
number of standard tRNAs extracted
Reyranella sp.
organism
WHOLE ORGANISM
organism part
USA|North America
original collection location
ASG
project name
Filtered on 11um nylon filter and washed with NCL autoclaved; concentrated from 50ml to 1.5ml
sample collection method
SAMEA117820515
sample derived from
Reyranella sp.
scientific_name
Pacbio Sequel II
sequencing method
https://www.ccap.ac.uk/catalogue/strain-1660-25?mfp=61-archived%5BAvailable%5D&search=1660%2F25
specimen voucher url
UOBC0000005
specimen_id
1660/25
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
1b7baf7f-a1bb-461f-a1bd-400e2722d697-asg-MAGScoT_cleanbin_000026
title
piParTeta1.Reyranella_sp_1
tolid