PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2025-03-12
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23804693
SRA accession
7d314c9c-74a5-4850-b22e-c5945c9fd95e
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
binning software
aquatic biome
broad-scale environmental context
D SCHOENBERG
collected_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
collecting institution
2020-09-02
collection date
82.44
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
1.0
%
contamination score
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
18.00
DD
geographic location (latitude)
-77.00
DD
geographic location (longitude)
Florida | University of South Florida
geographic location (region and locality)
NOT APPLICABLE
habitat
adult
host life stage
Symbiodinium pilosum
host scientific name
not applicable
host sex
2952
host taxid
T LAJEUNESSE
identified_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Symbiodinium pilosum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
39
number of standard tRNAs extracted
Algiphilus sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117815042
sample derived from
Algiphilus sp.
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000032
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
7d314c9c-74a5-4850-b22e-c5945c9fd95e-asg-MAGScoT_cleanbin_000019
title
pySymPilo4.Algiphilus_sp_1
tolid