PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-12
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23804919
SRA accession
b945f644-a69f-41e5-828e-e906d6565c75
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
DASTOOL (version 1.1.5); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Yu-Jing Chiou
collected_by
University of New South Wales
collecting institution
2024-02-29
collection date
15.16
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.68
%
contamination score
10
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
-33.99
DD
geographic location (latitude)
151.23
DD
geographic location (longitude)
New South Wales | Bare Island | Sydney
geographic location (region and locality)
Coastal rocky reef
habitat
adult
host life stage
Scopalina australiensis
host scientific name
not collected
host sex
3128397
host taxid
Torsten Thomas
identified_by
University of New South Wales
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Scopalina australiensis
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
6
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117815270
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000329
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
b945f644-a69f-41e5-828e-e906d6565c75-asg-bin.126
title
odScoAust1.Gammaproteobacteria_1
tolid