PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000050
ENA-CHECKLIST
University of British Columbia
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23810187
SRA accession
401e0b1e-c4f5-4226-b35a-b723e9d810b4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Estelle Kilias
collected_by
University of Oxford
collecting institution
2023-01-25
collection date
98.65
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.35
%
contamination score
1660/25
culture_or_strain_id
ciliate culture
environmental medium
United Kingdom
geographic location (country and/or sea)
51.76
DD
geographic location (latitude)
-1.25
DD
geographic location (longitude)
Oxford|Zoology Department
geographic location (region and locality)
Freshwater
habitat
not applicable
host life stage
Paramecium tetratobursaria
host scientific name
not applicable
host sex
3029280
host taxid
NOT COLLECTED
identified_by
CCAP
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Paramecium tetratobursaria
isolation_source
freshwater biome
local environmental context
ciliate metagenome
metagenomic source
53
number of standard tRNAs extracted
Limisphaerales bacterium
organism
WHOLE ORGANISM
organism part
USA|North America
original collection location
ASG
project name
Filtered on 11um nylon filter and washed with NCL autoclaved; concentrated from 50ml to 1.5ml
sample collection method
SAMEA117820515
sample derived from
Limisphaerales bacterium
scientific_name
Pacbio Sequel II
sequencing method
https://www.ccap.ac.uk/catalogue/strain-1660-25?mfp=61-archived%5BAvailable%5D&search=1660%2F25
specimen voucher url
UOBC0000005
specimen_id
1660/25
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
401e0b1e-c4f5-4226-b35a-b723e9d810b4-asg-MAGScoT_cleanbin_000034
title
piParTeta1.Limisphaerales_1
tolid