PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000050
ENA-CHECKLIST
University of Rhode Island
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23809601
SRA accession
f945abe8-8eaf-40ba-9fcb-6f508d1d273b
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 1.0)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
IAN HUGHES
collected_by
Harvard University
collecting institution
2023-07-12
collection date
86.61
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
9.9
%
contamination score
2505.73
m
depth
adult gastropod tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
9.84
DD
geographic location (latitude)
-104.29
DD
geographic location (longitude)
International waters | East Pacific Rise | Crab Spa Vent
geographic location (region and locality)
Hydrothermal vent
habitat
adult
host life stage
Rhynchopelta concentrica
host scientific name
not collected
host sex
55023
host taxid
STEPHANE HOURDEZ
identified_by
Oceanological Observatory of Banyuls-sur-Mer
identifier_affiliation
metagenome-assembled genome
investigation type
Gastropod: Rhynchopelta concentrica
isolation_source
nan
local environmental context
mollusc metagenome
metagenomic source
35
number of standard tRNAs extracted
Sulfurovaceae bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117819951
sample derived from
Sulfurovaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
URI0000048
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
f945abe8-8eaf-40ba-9fcb-6f508d1d273b-asg-MAGScoT_cleanbin_000008
title
xgRhyConc1.Sulfurovaceae_2
tolid