PROKKA (version 1.14.5)
16S recovery software
Yes
16s recovered
2025-03-12
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23804699
SRA accession
f58e0438-f117-49db-a735-6b1937910821
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7)
binning software
aquatic biome
broad-scale environmental context
D SCHOENBERG
collected_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
collecting institution
2020-09-02
collection date
97.73
%
completeness score
checkM (version 1.2.1); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
18.00
DD
geographic location (latitude)
-77.00
DD
geographic location (longitude)
Florida | University of South Florida
geographic location (region and locality)
NOT APPLICABLE
habitat
adult
host life stage
Symbiodinium pilosum
host scientific name
not applicable
host sex
2952
host taxid
T LAJEUNESSE
identified_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Symbiodinium pilosum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
49
number of standard tRNAs extracted
Phycisphaerales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117815042
sample derived from
Phycisphaerales bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000032
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.5)
tRNA extraction software
GTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
f58e0438-f117-49db-a735-6b1937910821-asg-MAGScoT_cleanbin_000017
title
pySymPilo4.Phycisphaerales_1
tolid