PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-12
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23804878
SRA accession
c046bb58-c084-4f28-8eed-61e30cd6cb64
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
SALLY LEYS
collected_by
University of Alberta
collecting institution
2024-04-02
collection date
96.95
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
4.24
%
contamination score
15
m
depth
adult sponge tissue
environmental medium
Canada
geographic location (country and/or sea)
48.83
DD
geographic location (latitude)
-125.14
DD
geographic location (longitude)
BRITISH COLUMBIA | BAMFIELD | BAMFIELD MARINE SCIENCES CENTRE
geographic location (region and locality)
SUBTIDAL ROCK EXPOSED
habitat
adult
host life stage
Tethya californiana
host scientific name
not collected
host sex
283519
host taxid
SALLY LEYS
identified_by
University of Alberta
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Tethya californiana
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
46
number of standard tRNAs extracted
Roseovarius sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117815210
sample derived from
Roseovarius sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000350
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
c046bb58-c084-4f28-8eed-61e30cd6cb64-asg-MAGScoT_cleanbin_000002
title
odTetCali1.Roseovarius_sp_1
tolid