PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-12
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23804952
SRA accession
44458975-8653-4619-a5f0-2cff036220b5
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Yu-Jing Chiou
collected_by
University of New South Wales
collecting institution
2024-02-29
collection date
98.28
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
6.9
%
contamination score
10
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
-33.99
DD
geographic location (latitude)
151.23
DD
geographic location (longitude)
New South Wales | Bare Island | Sydney
geographic location (region and locality)
Coastal rocky reef
habitat
adult
host life stage
Spheciospongia papillosa
host scientific name
not collected
host sex
3133104
host taxid
Torsten Thomas
identified_by
University of New South Wales
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Spheciospongia papillosa
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
46
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117815301
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000323
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
44458975-8653-4619-a5f0-2cff036220b5-asg-MAGScoT_cleanbin_000008
title
odSphPapi1.Gammaproteobacteria_2
tolid