PROKKA (version 1.14.6)
16S recovery software
No
16s recovered
2025-03-13
ENA first public
ERC000050
ENA-CHECKLIST
University of Rhode Island
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23809975
SRA accession
c84c503d-5b15-41de-8782-10c34790b212
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
ANNA SCHRECENGOST
collected_by
UNIVERSITY OF RHODE ISLAND
collecting institution
2022-09-02
collection date
13.93
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.05
%
contamination score
NAPAT2 strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
culture_or_strain_id
00:00:00
m
depth
ciliate culture
environmental medium
USA
geographic location (country and/or sea)
41.49
DD
geographic location (latitude)
-71.42
DD
geographic location (longitude)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
geographic location (region and locality)
salt marsh sediment
habitat
vegetative cell
host life stage
Plagiopyla frontata
host scientific name
not applicable
host sex
35117
host taxid
ANNA SCHRECENGOST
identified_by
UNIVERSITY OF RHODE ISLAND
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Plagiopyla frontata
isolation_source
marine biome
local environmental context
ciliate metagenome
metagenomic source
19
number of standard tRNAs extracted
bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117820327
sample derived from
bacterium
scientific_name
Pacbio Sequel II
sequencing method
URI0000074
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
c84c503d-5b15-41de-8782-10c34790b212-asg-bin.15
title
piPlaFron3.Bacteria_1
tolid