PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000050
ENA-CHECKLIST
University of Rhode Island
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23810223
SRA accession
aa0ba603-9995-47b9-939c-4e08ce01dbe9
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
ANNA SCHRECENGOST
collected_by
UNIVERSITY OF RHODE ISLAND
collecting institution
2022-09-02
collection date
81.98
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.16
%
contamination score
JUDRED strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
culture_or_strain_id
00:00:00
m
depth
ciliate culture
environmental medium
USA
geographic location (country and/or sea)
41.49
DD
geographic location (latitude)
-71.42
DD
geographic location (longitude)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
geographic location (region and locality)
salt marsh sediment
habitat
vegetative cell
host life stage
Plagiopyla sp. strain JUDRED
host scientific name
not applicable
host sex
2980486
host taxid
ANNA SCHRECENGOST
identified_by
UNIVERSITY OF RHODE ISLAND
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Plagiopyla sp. strain JUDRED
isolation_source
marine biome
local environmental context
ciliate metagenome
metagenomic source
45
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117820574
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
URI0000076
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
aa0ba603-9995-47b9-939c-4e08ce01dbe9-asg-bin.2
title
piPlaSpeb2.Gammaproteobacteria_1
tolid