PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000047
ENA-CHECKLIST
University of Rhode Island
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23810236
SRA accession
5aa98761-87a2-44a1-93fc-02db6ad5c151
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
ANNA SCHRECENGOST
collected_by
UNIVERSITY OF RHODE ISLAND
collecting institution
2022-09-02
collection date
98.26
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.17
%
contamination score
F26 strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
culture_or_strain_id
00:00:00
m
depth
ciliate culture
environmental medium
USA
geographic location (country and/or sea)
41.49
DD
geographic location (latitude)
-71.42
DD
geographic location (longitude)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
geographic location (region and locality)
marine
habitat
vegetative cell
host life stage
Plagiopyla sp. F26
host scientific name
not applicable
host sex
3350321
host taxid
ANNA SCHRECENGOST
identified_by
UNIVERSITY OF RHODE ISLAND
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Plagiopyla sp. F26
isolation_source
marine biome
local environmental context
ciliate metagenome
metagenomic source
56
number of standard tRNAs extracted
Rhodospirillaceae bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117820586
sample derived from
Rhodospirillaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
URI0000083
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
5aa98761-87a2-44a1-93fc-02db6ad5c151-asg-bin.52
title
piPlaSped1.Rhodospirillaceae_1
tolid