PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-14
ENA first public
ERC000047
ENA-CHECKLIST
University of Rhode Island
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.28)
MAG coverage software
ERS23811956
SRA accession
40162ec3-bb68-444b-8bf7-e4894c729cf2
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 1.0)
assembly software
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.1.0); MetaBat (version 2.2.17); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR (version 1.3.2); DAS_Tool (version 1.1.4)
binning software
aquatic biome
broad-scale environmental context
IAN HUGHES
collected_by
Harvard University
collecting institution
2023-07-12
collection date
90.09
%
completeness score
checkM (version 1.2.3); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
2505.73
m
depth
adult gastropod tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
9.84
DD
geographic location (latitude)
-104.29
DD
geographic location (longitude)
International waters | East Pacific Rise | Crab Spa Vent
geographic location (region and locality)
Hydrothermal vent
habitat
adult
host life stage
Rhynchopelta concentrica
host scientific name
not collected
host sex
55023
host taxid
STEPHANE HOURDEZ
identified_by
Oceanological Observatory of Banyuls-sur-Mer
identifier_affiliation
metagenome-assembled genome
investigation type
Gastropod: Rhynchopelta concentrica
isolation_source
marine biome
local environmental context
mollusc metagenome
metagenomic source
35
number of standard tRNAs extracted
Cardiobacteriales bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117822301
sample derived from
Cardiobacteriales bacterium
scientific_name
Pacbio Sequel II
sequencing method
URI0000048
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
40162ec3-bb68-444b-8bf7-e4894c729cf2-asg-MAGScoT_cleanbin_000003
title
xgRhyConc1.Cardiobacteriales_1
tolid