PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000047
ENA-CHECKLIST
University of Rhode Island
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23810227
SRA accession
227629a5-9d24-4079-af3c-2046eb677fbc
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
ANNA SCHRECENGOST
collected_by
UNIVERSITY OF RHODE ISLAND
collecting institution
2022-09-02
collection date
100
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.07
%
contamination score
JUDRED strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
culture_or_strain_id
00:00:00
m
depth
ciliate culture
environmental medium
USA
geographic location (country and/or sea)
41.49
DD
geographic location (latitude)
-71.42
DD
geographic location (longitude)
RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
geographic location (region and locality)
salt marsh sediment
habitat
vegetative cell
host life stage
Plagiopyla sp. strain JUDRED
host scientific name
not applicable
host sex
2980486
host taxid
ANNA SCHRECENGOST
identified_by
UNIVERSITY OF RHODE ISLAND
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Plagiopyla sp. strain JUDRED
isolation_source
marine biome
local environmental context
ciliate metagenome
metagenomic source
93
number of standard tRNAs extracted
Maridesulfovibrio sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117820574
sample derived from
Maridesulfovibrio sp.
scientific_name
Pacbio Sequel II
sequencing method
URI0000076
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
227629a5-9d24-4079-af3c-2046eb677fbc-asg-bin.43
title
piPlaSpeb2.Maridesulfovibrio_sp_1
tolid