PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-13
ENA first public
ERC000050
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23810243
SRA accession
ab2c89d8-e450-424a-8731-da37f4835118
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF CALIFORNIA
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Michael Dawson
collected_by
UC Merced
collecting institution
2022-07-29
collection date
68.97
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
3.8
m
depth
adult xenacoelomorph tissue
environmental medium
Palau
geographic location (country and/or sea)
7.19
DD
geographic location (latitude)
134.30
DD
geographic location (longitude)
Koror | Flatworm Lake
geographic location (region and locality)
Marine Lake
habitat
adult
host life stage
Amphiscolops sp. MND2022
host scientific name
not collected
host sex
2979135
host taxid
Michael Dawson
identified_by
UC Merced
identifier_affiliation
metagenome-assembled genome
investigation type
Xenacoelomorph: Amphiscolops sp. MND2022
isolation_source
marine biome
local environmental context
invertebrate metagenome
metagenomic source
38
number of standard tRNAs extracted
Pararhizobium sp.
organism
WHOLE ORGANISM
organism part
2022-07-29
original collection date
Palau | Koror | Flatworm Lake
original collection location
7.1917
DD
original geographic location (latitude)
134.3021
DD
original geographic location (longitude)
ASG
project name
by hand
sample collection method
SAMEA117820595
sample derived from
Pararhizobium sp.
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000004
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
ab2c89d8-e450-424a-8731-da37f4835118-asg-MAGScoT_cleanbin_000003
title
txAmpSpea1.Pararhizobium_sp_1
tolid