PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-17
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23819489
SRA accession
94ddc412-33f0-409c-8e4e-05f7d980c747
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF DERBY
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Kate Quigley
collected_by
Australian Institute of Marine Science
collecting institution
2020-11-10
collection date
87.27
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.73
%
contamination score
5
m
depth
dinoflagellate culture
environmental medium
Australia
geographic location (country and/or sea)
-14.34
DD
geographic location (latitude)
145.27
DD
geographic location (longitude)
TopJewell
geographic location (region and locality)
NA
habitat
not applicable
host life stage
Symbiodinium sp. 221 229
host scientific name
not applicable
host sex
2885082
host taxid
Kate Quigley, Sam Noonan
identified_by
Australian Insitute of Marine Science
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Symbiodinium sp. 221 229
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
37
number of standard tRNAs extracted
Caldilineaceae bacterium
organism
WHOLE ORGANISM
organism part
2020-11-10
original collection date
Australia | TopJewell
original collection location
ASG
project name
SAMEA117829808
sample derived from
Caldilineaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000236
specimen_id
NA
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
94ddc412-33f0-409c-8e4e-05f7d980c747-asg-MAGScoT_cleanbin_000015
title
pySymSpeb4.Caldilineaceae_2
tolid