PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-17
ENA first public
ERC000047
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23819567
SRA accession
3be665f0-f184-4678-b6b7-05c68c88e287
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ROBERT TRENCH
collected_by
UNIVERSITY OF CALIFORNIA AT SANTA BARBARA
collecting institution
2022-05-04
collection date
99.57
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.3
%
contamination score
RT-002
culture_or_strain_id
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
40.80
DD
geographic location (latitude)
-77.86
DD
geographic location (longitude)
PENNSYLVANIA | PENNSYLVANIA STATE UNIVERSITY | DEPARTMENT OF BIOLOGY | LAJEUNESSE LAB
geographic location (region and locality)
Growth medium
habitat
vegetative cell
host life stage
Breviolum minutum
host scientific name
not applicable
host sex
2499525
host taxid
TODD LAJEUNESSE
identified_by
PENNSYLVANIA STATE UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Breviolum minutum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
58
number of standard tRNAs extracted
Denitrobaculum sp.
organism
WHOLE ORGANISM
organism part
UNITED STATES OF AMERICA | FLORIDA
original collection location
ASG
project name
culture
sample collection method
SAMEA117829873
sample derived from
Denitrobaculum sp.
scientific_name
Pacbio Sequel II
sequencing method
NSU0026001
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
3be665f0-f184-4678-b6b7-05c68c88e287-asg-MAGScoT_cleanbin_000014
title
pyBreMinu3.Denitrobaculum_sp_1
tolid