PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-17
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23819553
SRA accession
009cb6c1-fe1f-43ed-b175-49627a96506e
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ROBERT TRENCH
collected_by
UNIVERSITY OF CALIFORNIA AT SANTA BARBARA
collecting institution
2022-05-04
collection date
95.45
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
RT-002
culture_or_strain_id
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
40.80
DD
geographic location (latitude)
-77.86
DD
geographic location (longitude)
PENNSYLVANIA | PENNSYLVANIA STATE UNIVERSITY | DEPARTMENT OF BIOLOGY | LAJEUNESSE LAB
geographic location (region and locality)
Growth medium
habitat
vegetative cell
host life stage
Breviolum minutum
host scientific name
not applicable
host sex
2499525
host taxid
TODD LAJEUNESSE
identified_by
PENNSYLVANIA STATE UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Breviolum minutum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
51
number of standard tRNAs extracted
Phycisphaeraceae bacterium
organism
WHOLE ORGANISM
organism part
UNITED STATES OF AMERICA | FLORIDA
original collection location
ASG
project name
culture
sample collection method
SAMEA117829873
sample derived from
Phycisphaeraceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0026001
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
009cb6c1-fe1f-43ed-b175-49627a96506e-asg-MAGScoT_cleanbin_000021
title
pyBreMinu3.Phycisphaeraceae_1
tolid