PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-17
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23819461
SRA accession
828c6eb6-e98b-456e-8040-4ab2280a49ec
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
ROBERT TRENCH
collected_by
University of California -- Santa Barbara
collecting institution
2020-12-10
collection date
98.75
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.18
%
contamination score
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
University Park, PA | Pennsylvania State University
geographic location (region and locality)
Unknown
habitat
vegetative cell
host life stage
Breviolum psygmophilum
host scientific name
not applicable
host sex
2518962
host taxid
JOHN PARKINSON
identified_by
UNIVERSITY OF SOUTH FLORIDA
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Breviolum psygmophilum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
97
number of standard tRNAs extracted
Pirellulaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117829772
sample derived from
Pirellulaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000061
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
828c6eb6-e98b-456e-8040-4ab2280a49ec-asg-bin.13
title
pyBrePsyg7.Pirellulaceae_1
tolid