PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-18
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23822963
SRA accession
bf300f33-ff0f-4369-93e0-9b69cf44e235
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
SENJIE LIN
collected_by
UNIVERSITY OF CONNECTICUT
collecting institution
2021-04-10
collection date
67.64
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
0
m
depth
euglenozoa culture
environmental medium
USA
geographic location (country and/or sea)
41.32
DD
geographic location (latitude)
-72.06
DD
geographic location (longitude)
University of Connecticut | Avery Point campus
geographic location (region and locality)
Estuary
habitat
not applicable
host life stage
Eutreptiella sp. Long Island Sound 2002
host scientific name
not applicable
host sex
1298769
host taxid
SENJIE LIN | RITA KUO
identified_by
UNIVERSITY OF CONNECTICUT
identifier_affiliation
metagenome-assembled genome
investigation type
Euglenozoa: Eutreptiella sp. Long Island Sound 2002
isolation_source
estuarine biome
local environmental context
protist metagenome
metagenomic source
39
number of standard tRNAs extracted
Parvibaculum sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
Endosymbiont
relationship
SAMEA117833281
sample derived from
Parvibaculum sp.
scientific_name
Pacbio Sequel II
sequencing method
NSU0024001
specimen_id
CCMP3347
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
bf300f33-ff0f-4369-93e0-9b69cf44e235-asg-bin.174
title
peEutLong1.Parvibaculum_sp_1
tolid