PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-18
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23831176
SRA accession
9181644f-f857-49b1-b147-4349bd81fa5c
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ROBERT K. TRENCH
collected_by
UNIVERSITY OF CALIFORNIA-SANTA BARBARA
collecting institution
not collected
collection date
79.55
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.14
%
contamination score
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
Florida
geographic location (region and locality)
NOT COLLECTED
habitat
not applicable
host life stage
Symbiodinium microadriaticum
host scientific name
not applicable
host sex
2951
host taxid
ROBERT TRENCH | TODD LAJEUNSSE
identified_by
University of California -- Santa Barbara | PENN STATE UNIVERSITY
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Symbiodinium microadriaticum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
43
number of standard tRNAs extracted
Phycisphaerales bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Mutualist
relationship
SAMEA117841495
sample derived from
Phycisphaerales bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0025401
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
9181644f-f857-49b1-b147-4349bd81fa5c-asg-MAGScoT_cleanbin_000052
title
pySymMicr2.Phycisphaerales_2
tolid