PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-19
ENA first public
ERC000050
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23833590
SRA accession
aa701b1d-484d-43bb-abde-c855fa89fa74
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
S CHANG
collected_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
collecting institution
2020-09-02
collection date
84.81
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.42
%
contamination score
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
25.00
DD
geographic location (latitude)
-80.50
DD
geographic location (longitude)
Florida | University of South Florida
geographic location (region and locality)
NOT APPLICABLE
habitat
adult
host life stage
Symbiodinium microadriaticum
host scientific name
not applicable
host sex
2951
host taxid
T LAJEUNESSE
identified_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Symbiodinium microadriaticum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
40
number of standard tRNAs extracted
Roseovarius sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117843908
sample derived from
Roseovarius sp.
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000031
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
aa701b1d-484d-43bb-abde-c855fa89fa74-asg-bin.56
title
pySymMicr3.Roseovarius_sp_1
tolid