PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-19
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23833604
SRA accession
502da4d8-7385-4911-bedc-36c9486616f1
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
S CHANG
collected_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
collecting institution
2020-09-02
collection date
99.3
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.42
%
contamination score
dinoflagellate culture
environmental medium
USA
geographic location (country and/or sea)
25.00
DD
geographic location (latitude)
-80.50
DD
geographic location (longitude)
Florida | University of South Florida
geographic location (region and locality)
NOT APPLICABLE
habitat
adult
host life stage
Symbiodinium microadriaticum
host scientific name
not applicable
host sex
2951
host taxid
T LAJEUNESSE
identified_by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Symbiodinium microadriaticum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
53
number of standard tRNAs extracted
Mameliella sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117843908
sample derived from
Mameliella sp.
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000031
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
502da4d8-7385-4911-bedc-36c9486616f1-asg-bin.69
title
pySymMicr3.Mameliella_sp_1
tolid