PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-21
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23841436
SRA accession
db4b13ac-2574-4c45-916c-b48a2a49b3d8
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
GREG ROUSE
collected_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collecting institution
2024-05-17
collection date
99.19
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
4.07
%
contamination score
4927
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
57.45
DD
geographic location (latitude)
-148.00
DD
geographic location (longitude)
Pacific Ocean | Gulf of Alaska | Edge Seep
geographic location (region and locality)
cold seep
habitat
adult
host life stage
Spirobrachia grandis
host scientific name
not collected
host sex
648233
host taxid
GREG ROUSE
identified_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Spirobrachia grandis
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
37
number of standard tRNAs extracted
Arcobacteraceae bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117851748
sample derived from
Arcobacteraceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000339
specimen_id
SIO:BIC:W10018
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
db4b13ac-2574-4c45-916c-b48a2a49b3d8-asg-MAGScoT_cleanbin_000004
title
wsSpiGran1.Arcobacteraceae_1
tolid