PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-21
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23841425
SRA accession
74a0feaa-7c97-4e09-9825-d9509bbcf06a
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
ROBERT VRIJENHOEK
collected_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collecting institution
2004-11-30
collection date
100
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.61
%
contamination score
2893
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
36.61
DD
geographic location (latitude)
-122.43
DD
geographic location (longitude)
Pacific Ocean off northern California | Monterey Submarine Canyon | Ruby whale fall site
geographic location (region and locality)
whale fall
habitat
adult
host life stage
Osedax frankpressi
host scientific name
female
host sex
283776
host taxid
GREG ROUSE
identified_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Osedax frankpressi
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
43
number of standard tRNAs extracted
Sulfurimonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A10559
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A10559/
proxy voucher url
collected by the Remotely Operated Vehicle Tiburon
sample collection method
SAMEA117851738
sample derived from
Sulfurimonas sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000265
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
74a0feaa-7c97-4e09-9825-d9509bbcf06a-asg-MAGScoT_cleanbin_000004
title
wsOseFran1.Sulfurimonas_sp_1
tolid
https://ror.org/04v7hvq31
voucher institution url