PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-21
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23841717
SRA accession
67f89912-2fcb-4ace-b58b-8e0e5c0c6c67
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-02-19
collection date
86.14
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.3
%
contamination score
662
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
slope
habitat
adult
host life stage
Cladocroce sp. UH 2024
host scientific name
not applicable
host sex
3127776
host taxid
SADIE MILLS
identified_by
NIWA, New Zealand
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Cladocroce sp. UH 2024
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
39
number of standard tRNAs extracted
Pirellulales bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
unknown
relationship
SAMEA117852013
sample derived from
Pirellulales bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000315
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
67f89912-2fcb-4ace-b58b-8e0e5c0c6c67-asg-MAGScoT_cleanbin_000026
title
odClaUhxx1.Pirellulales_1
tolid