PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-21
ENA first public
ERC000047
ENA-CHECKLIST
University of Vienna (Mollusc)
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23841442
SRA accession
9219a430-f4aa-42ca-b336-3b3924b8ba02
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF VIENNA (MOLLUSC)
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Barb Campbell
collected_by
Clemson University
collecting institution
2022-02-06
collection date
99.18
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
40cm
m
depth
adult bivalve tissue
environmental medium
USA
geographic location (country and/or sea)
24.60
DD
geographic location (latitude)
-81.57
DD
geographic location (longitude)
South Carolina | Clemson University
geographic location (region and locality)
Halodule wrightii seagrass bed
habitat
adult
host life stage
Anodontia alba
host scientific name
not collected
host sex
244458
host taxid
Laurie Anderson
identified_by
South Dakota School of Mines and Technology
identifier_affiliation
metagenome-assembled genome
investigation type
Bivalve: Anodontia alba
isolation_source
marine biome
local environmental context
mollusc metagenome
metagenomic source
56
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
2022-02-06
original collection date
USA
original collection location
ASG
project name
SAMEA117851760
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
VIEM1130001
specimen_id
NOT COLLECTED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
9219a430-f4aa-42ca-b336-3b3924b8ba02-asg-bin.20
title
xbAnoAlba1.Rhodococcus_qingshengii_1
tolid