PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-21
ENA first public
ERC000050
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23841420
SRA accession
89a25a72-bcb2-41e0-ac90-214de1ecb1b6
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph; hic-mapping
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR
binning software
aquatic biome
broad-scale environmental context
ROBERT VRIJENHOEK
collected_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collecting institution
2004-11-30
collection date
88.15
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.37
%
contamination score
2893
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
36.61
DD
geographic location (latitude)
-122.43
DD
geographic location (longitude)
Pacific Ocean off northern California | Monterey Submarine Canyon | Ruby whale fall site
geographic location (region and locality)
whale fall
habitat
adult
host life stage
Osedax frankpressi
host scientific name
female
host sex
283776
host taxid
GREG ROUSE
identified_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Osedax frankpressi
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
41
number of standard tRNAs extracted
Psychrilyobacter sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A10559
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A10559/
proxy voucher url
collected by the Remotely Operated Vehicle Tiburon
sample collection method
SAMEA117851738
sample derived from
Psychrilyobacter sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000265
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
89a25a72-bcb2-41e0-ac90-214de1ecb1b6-asg-MAGScoT_cleanbin_000010
title
wsOseFran1.Psychrilyobacter_sp_1
tolid
https://ror.org/04v7hvq31
voucher institution url