PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-23
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23842168
SRA accession
23591a1e-bfa9-4a6c-bad8-f7ab3213c0a7
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Nadezhda Rimskaya-Korsakova
collected_by
Friedrich Schiller University Jena
collecting institution
2022-07-14
collection date
99.94
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
2356.0
m
depth
adult annelid tissue
environmental medium
Arctic Ocean
geographic location (country and/or sea)
73.57
DD
geographic location (latitude)
8.16
DD
geographic location (longitude)
Arctic Mid-Oceanic Ridge | Loki Castle Hydrothermal vent area
geographic location (region and locality)
diffuse venting sedimented area
habitat
adult
host life stage
Sclerolinum contortum
host scientific name
not collected
host sex
468923
host taxid
Nadezhda Rimskaya-Korsakova
identified_by
Friedrich Schiller University Jena
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Sclerolinum contortum
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
55
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
ASG
project name
ROV
sample collection method
SAMEA117852486
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000235
specimen_id
NOT_PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
23591a1e-bfa9-4a6c-bad8-f7ab3213c0a7-asg-bin.2
title
wsSclCont4.Rhodococcus_qingshengii_1
tolid