PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-23
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23842163
SRA accession
c9f9d35b-e432-4d16-9f7a-f6b54bcc9902
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
GREG ROUSE | CHARLOTTE SEID
collected_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collecting institution
2022-04-28
collection date
90.0
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.84
%
contamination score
0
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
32.87
DD
geographic location (latitude)
-117.25
DD
geographic location (longitude)
California | San Diego | Scripps Institution of Oceanography at the University of California San Diego | Marine Biology Research Division | Hubbs Hall | Greg Rouse Laboratory
geographic location (region and locality)
marine laboratory culture
habitat
adult
host life stage
Ophryotrocha siberti
host scientific name
not collected
host sex
864298
host taxid
GREG ROUSE
identified_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Ophryotrocha siberti
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
45
number of standard tRNAs extracted
Flavicella sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A1152
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A1152/
proxy voucher url
preserved by hand from laboratory culture
sample collection method
SAMEA117852478
sample derived from
Flavicella sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000156
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
c9f9d35b-e432-4d16-9f7a-f6b54bcc9902-asg-MAGScoT_cleanbin_000004
title
wjOphSibe6.Flavicella_sp_1
tolid
https://ror.org/04v7hvq31
voucher institution url