PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-23
ENA first public
ERC000050
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23842159
SRA accession
af3f44ca-e218-463b-b4f8-8805d52bcf96
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
GREG ROUSE | CHARLOTTE SEID
collected_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collecting institution
2022-04-28
collection date
95.97
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.15
%
contamination score
0
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
32.87
DD
geographic location (latitude)
-117.25
DD
geographic location (longitude)
California | San Diego | Scripps Institution of Oceanography at the University of California San Diego | Marine Biology Research Division | Hubbs Hall | Greg Rouse Laboratory
geographic location (region and locality)
marine laboratory culture
habitat
adult
host life stage
Ophryotrocha siberti
host scientific name
not collected
host sex
864298
host taxid
GREG ROUSE
identified_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Ophryotrocha siberti
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
29
number of standard tRNAs extracted
Salibacteraceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A1152
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A1152/
proxy voucher url
preserved by hand from laboratory culture
sample collection method
SAMEA117852478
sample derived from
Salibacteraceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000156
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
af3f44ca-e218-463b-b4f8-8805d52bcf96-asg-MAGScoT_cleanbin_000002
title
wjOphSibe6.Salibacteraceae_1
tolid
https://ror.org/04v7hvq31
voucher institution url