PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-23
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23842174
SRA accession
bc17454b-9ea9-4281-8ca2-06109ead9222
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
ROBERT VRIJENHOEK
collected_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collecting institution
1999-01-03
collection date
100
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.61
%
contamination score
2599
m
depth
adult annelid tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
-17.57
DD
geographic location (latitude)
-113.24
DD
geographic location (longitude)
Southern East Pacific Rise | 17S site
geographic location (region and locality)
hydrothermal vent
habitat
not collected
host life stage
Alvinella caudata
host scientific name
not collected
host sex
36105
host taxid
ROBERT VRIJENHOEK
identified_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Alvinella caudata
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
43
number of standard tRNAs extracted
Sulfurimonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A10948
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A10948/
proxy voucher url
collected by the Human Operated Vehicle Alvin
sample collection method
SAMEA117852490
sample derived from
Sulfurimonas sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000286
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
bc17454b-9ea9-4281-8ca2-06109ead9222-asg-bin.108
title
wtAlvCaud1.Sulfurimonas_sp_1
tolid
https://ror.org/04v7hvq31
voucher institution url