PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-23
ENA first public
ERC000050
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23842173
SRA accession
b7d2a1d7-2c64-4609-b17f-0ccd9b79fb45
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
ROBERT VRIJENHOEK
collected_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collecting institution
1999-01-03
collection date
98.72
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
5.0
%
contamination score
2599
m
depth
adult annelid tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
-17.57
DD
geographic location (latitude)
-113.24
DD
geographic location (longitude)
Southern East Pacific Rise | 17S site
geographic location (region and locality)
hydrothermal vent
habitat
not collected
host life stage
Alvinella caudata
host scientific name
not collected
host sex
36105
host taxid
ROBERT VRIJENHOEK
identified_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Alvinella caudata
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
38
number of standard tRNAs extracted
uncultured Sulfurospirillum sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A10948
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A10948/
proxy voucher url
collected by the Human Operated Vehicle Alvin
sample collection method
SAMEA117852490
sample derived from
uncultured Sulfurospirillum sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000286
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
b7d2a1d7-2c64-4609-b17f-0ccd9b79fb45-asg-bin.339
title
wtAlvCaud1.Sulfurospirillum_sp_1
tolid
https://ror.org/04v7hvq31
voucher institution url