PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-23
ENA first public
ERC000047
ENA-CHECKLIST
University of Vienna (Mollusc)
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23842184
SRA accession
ce77e197-c168-4bc4-8750-8ce2b630077d
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF VIENNA (MOLLUSC)
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Jean Lim
collected_by
University of Miami
collecting institution
2021-06-19
collection date
97.6
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.8
%
contamination score
40cm
m
depth
adult bivalve tissue
environmental medium
USA
geographic location (country and/or sea)
26.71
DD
geographic location (latitude)
-82.16
DD
geographic location (longitude)
South Carolina | Clemson University
geographic location (region and locality)
Halodule wrightii seagrass bed
habitat
adult
host life stage
Stewartia floridana
host scientific name
not collected
host sex
881254
host taxid
Jean Lim
identified_by
University of Miami
identifier_affiliation
metagenome-assembled genome
investigation type
Bivalve: Stewartia floridana
isolation_source
marine biome
local environmental context
mollusc metagenome
metagenomic source
46
number of standard tRNAs extracted
Spirochaetaceae bacterium
organism
WHOLE ORGANISM
organism part
2021-06-19
original collection date
USA
original collection location
ASG
project name
SAMEA117852501
sample derived from
Spirochaetaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
VIEM1120003
specimen_id
NOT COLLECTED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
ce77e197-c168-4bc4-8750-8ce2b630077d-asg-bin.18
title
xbSteFlor3.Spirochaetaceae_2
tolid