PROKKA (version 1.14.6)
16S recovery software
Yes
16s recovered
2025-03-23
ENA first public
ERC000050
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23842179
SRA accession
49ba06bd-b568-4ff5-bfcc-31ff2bcce7eb
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
QUEEN MARY UNIVERSITY OF LONDON
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
KATRINE WORSAAE
collected_by
University of Copenhagen
collecting institution
2020-10-27
collection date
26.63
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0
%
contamination score
1
m
depth
adult annelid tissue
environmental medium
Denmark
geographic location (country and/or sea)
55.64
DD
geographic location (latitude)
12.66
DD
geographic location (longitude)
Kastrup | The Blue Planet Aquarium | warm coral aquarium | coral sand
geographic location (region and locality)
marine tropical coarse coral sand
habitat
adult
host life stage
Trochonerilla mobilis
host scientific name
not collected
host sex
317908
host taxid
KATRINE WORSAAE
identified_by
University of Copenhagen
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Trochonerilla mobilis
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
34
number of standard tRNAs extracted
Vibrionaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117852499
sample derived from
Vibrionaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000090
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
49ba06bd-b568-4ff5-bfcc-31ff2bcce7eb-asg-bin.15
title
wuTroMobi1.Vibrionaceae_1
tolid