2025-03-31
ENA first public
ERC000011
ENA-CHECKLIST
Naseem Gaur, International centre for genetic engineering and biotechnology
INSDC center name
public
INSDC status
ERS23820848
SRA accession
SAMIN0015511-Genome Sequence of the Carotenoid Producing Estuarine Oleaginous Yeast Rhodotorula pacifica INDKK Using Illumina and Nanopore Hybrid Assembly
Submitter Id
IBDC
broker name
2017-10-22
collection date
Rhodotorula pacifica INDKK is an oleaginous red yeast that can accumulate lipids to more than 60 percent of its biomass and is capable of using C5 and C6 sugars present in waste hydrolysates. It also produces carotenoids, when cultivated under nitrogen-deficient conditions. This is the first report of genome sequence of R.pacifica. The de novo assembly was carried out using MaSuRCA v4.0.3 resulted in 117 contigs scaffolds with total genome size of 33.6 Mb.
description
Mangrove
environment (biome)
Estuarine mud
environment (feature)
Soil
environment (material)
India
geographic location (country and/or sea)
2
geographic location (depth)
2
geographic location (elevation)
16.83139 N
geographic location (latitude)
82.33667 E
geographic location (longitude)
eukaryote
investigation type
Rhodotorula pacifica
organism
Genome Sequence of the  Oleaginous Yeast Rhodotorula pacifica INDKK Using Illumina and Nanopore Hybrid Assembly
project name
Rhodotorula pacifica
scientific_name
Illumina  and Nanopore
sequencing method
soil
soil environmental package
Genome Sequence of the Carotenoid Producing Estuarine Oleaginous Yeast Rhodotorula pacifica INDKK Using Illumina and Nanopore Hybrid Assembly
title