2025-04-03
ENA first public
ERC000047
ENA-CHECKLIST
Uni Bremen
INSDC center name
public
INSDC status
ERS23962115
SRA accession
Protein_d157_A_EX4484-6
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
SPAdes 3.15.5, megahit 1.2.9
assembly software
differential coverage, tetranucleotide frequency
binning parameters
concoct, metabat2
binning software
marine sediment [ENVO:03000033] | coast [ENVO:01000687]
broad-scale environmental context
2021-12-02
collection date
97.86
%
completeness score
checkm2
completeness software
2.81
%
contamination score
EX4484-6 MAG from anoxic enrichment with 5 mL of slurry enrichment containing  protein, antibiotics and sulfate, transferred after 372 days into Widdel medium, containing  protein, antibiotics and sulfate.  Timepoint day 157, incubated at 20 degrees C.
description
microbial community [PCO:1000004] | mesocosm [ENVO:01000620]
environmental medium
North Sea
geographic location (country and/or sea)
54.087627
DD
geographic location (latitude)
7.968191
DD
geographic location (longitude)
Sediment slurry from Helgoland mud area
isolation_source
anaerobic sediment [ENVO:00002045] | mud [ENVO:01000001]
local environmental context
sediment metagenome
metagenomic source
Thermoplasmatota archaeon
organism
Characterization of uncultivated Thermoplasmatota in anaerobic marine sediments of the Helgoland mud area
project name
SAMEA116057598
sample derived from
Thermoplasmatota archaeon
scientific_name
multi-marker approach
taxonomic identity marker
EX4484-6 MAG from Helgoland mud area slurry incubation - protein.antibiotics.sulfate - day 157
title