Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-07
ENA first public
ERC000047
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23978315
SRA accession
ac9bdbf3-5e15-4aa8-846c-d859e9b1409a
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ| MARIA DEL PILAR| DANIEL TOLEDO
collected_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
collecting institution
2021-05-08
collection date
96.8
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0
%
contamination score
adult gastropod tissue
environmental medium
Puerto Rico
geographic location (country and/or sea)
13.0
m
geographic location (depth)
17.94
DD
geographic location (latitude)
-67.24
DD
geographic location (longitude)
Cabo Rojo
geographic location (region and locality)
coral reef
habitat
adult
host life stage
Strombus gigas
host scientific name
not collected
host sex
291982
host taxid
NIKOLOAS SCHIZAS| JAAZIEL GARCIA HERNANDEZ| ALEJANDRO GONZALEZ
identified_by
UNIVERSITY OF PUERTO RICO MAYAGUEZ
identifier_affiliation
metagenome-assembled genome
investigation type
Gastropod: Strombus gigas
isolation_source
marine biome
local environmental context
mollusc metagenome
metagenomic source
45
number of standard tRNAs extracted
Spirochaetia bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA117984437
sample derived from
Spirochaetia bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0054703
specimen_id
Sanger Institute Genome PR43
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
ac9bdbf3-5e15-4aa8-846c-d859e9b1409a-asg-bin.222
title
xgStrGiga3.Spirochaetia_1
tolid