No
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-07
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23978184
SRA accession
6480dcb6-2b70-4552-a49c-90f5e009a24b
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Michael Middlebrooks
collected_by
University of Tampa
collecting institution
2024-01-19
collection date
70.78
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.65
%
contamination score
0.99
m
depth
adult chlorophyte tissue
environmental medium
USA
geographic location (country and/or sea)
27.95
DD
geographic location (latitude)
-82.47
DD
geographic location (longitude)
Florida | Tampa | University of Tampa
geographic location (region and locality)
Taken from aquarium in lab, but original habitat is a seagrass/macroalgal bed
habitat
vegetative structure
host life stage
Penicillus lamourouxii
host scientific name
not collected
host sex
381418
host taxid
Michael Middlebrooks
identified_by
University of Tampa
identifier_affiliation
metagenome-assembled genome
investigation type
Chlorophyte: Penicillus lamourouxii
isolation_source
marine biome
local environmental context
algae metagenome
metagenomic source
28
number of standard tRNAs extracted
Hyphomonadaceae bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA117984261
sample derived from
Hyphomonadaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
NSU0027201
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
6480dcb6-2b70-4552-a49c-90f5e009a24b-asg-MAGScoT_cleanbin_000088
title
ucPenLamo1.Hyphomonadaceae_2
tolid