Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-07
ENA first public
ERC000047
ENA-CHECKLIST
University of British Columbia
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23978124
SRA accession
b2699e1f-069b-4513-b9ab-960a63940dd7
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Estelle Kilias
collected_by
University of Oxford
collecting institution
2023-01-25
collection date
99.78
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.76
%
contamination score
1660/36
culture_or_strain_id
ciliate culture
environmental medium
United Kingdom
geographic location (country and/or sea)
51.76
DD
geographic location (latitude)
-1.25
DD
geographic location (longitude)
Oxford|Zoology Department
geographic location (region and locality)
Freshwater
habitat
not applicable
host life stage
Paramecium deuterobursaria
host scientific name
not applicable
host sex
3029279
host taxid
NOT COLLECTED
identified_by
CCAP
identifier_affiliation
metagenome-assembled genome
investigation type
Ciliate: Paramecium deuterobursaria
isolation_source
freshwater biome
local environmental context
ciliate metagenome
metagenomic source
47
number of standard tRNAs extracted
Lysobacterales bacterium
organism
WHOLE ORGANISM
organism part
Austria
original collection location
ASG
project name
Filtered on 11um nylon filter and washed with NCL autoclaved; concentrated from 50ml to 1.5ml
sample collection device or method
SAMEA117984141
sample derived from
Lysobacterales bacterium
scientific_name
Pacbio Sequel II
sequencing method
https://www.ccap.ac.uk/catalogue/strain-1660-36?mfp=61-archived%5BAvailable%5D&search=1660%2F36&page=2
specimen voucher url
UOBC0000003
specimen_id
1660/36
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
b2699e1f-069b-4513-b9ab-960a63940dd7-asg-MAGScoT_cleanbin_000010
title
piParDeut1.Pseudoxanthomonas_sp_1
tolid