2025-04-10
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS23984720
SRA accession
SRR14736654_binner13_Refined_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit_v1.2.9
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2020-04-01/2021-03-01
collection date
83.71
%
completeness score
CheckM2_v1.0.1
completeness software
2.33
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14736654 of study SRP322767.
description
tongue
environmental medium
USA
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human oral metagenome
isolation_source
oral cavity
local environmental context
human oral metagenome
metagenomic source
uncultured Actinomyces sp.
organism
The severe acute respiratory syndrome coronavirus 2 caused the pandemic Coronavirus Disease 2019, or COVID-19. Many infected individuals exhibit prolonged symptoms or Long COVID even after having cleared their infection. Long COVID is thought to be linked to immune dysregulation due to harmful inflammation, with the exact causes being unknown. We examined the relationship between the oral microbiome and the duration of Long COVID symptoms among a cohort of patients admitted to the Emergency Department.
project name
SAMN19571607
sample derived from
uncultured Actinomyces sp.
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR14736654_binner13_Refined_1
title