Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-11
ENA first public
ERC000047
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23988129
SRA accession
1c81f69c-037a-4853-b6df-20dfcc48d13e
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
LAURA PRIETO
collected_by
ICMAN-CSIC
collecting institution
2022-09-19T13:00:00
collection date
90.87
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
2.17
%
contamination score
adult jellyfish tissue
environmental medium
Spain
geographic location (country and/or sea)
36.53
DD
geographic location (latitude)
-6.21
DD
geographic location (longitude)
C√ÅDIZ | PUERTO REAL | ICMAN-CSIC
geographic location (region and locality)
LABORATORY
habitat
juvenile
host life stage
Cotylorhiza tuberculata
host scientific name
other
host sex
323337
host taxid
LAURA PRIETO
identified_by
ICMAN-CSIC
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Cotylorhiza tuberculata
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
44
number of standard tRNAs extracted
Alphaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Selected with pipettor from aquarium
sample collection method
SAMEA117994215
sample derived from
Alphaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000709
specimen_id
NOT_COLLECTED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
1c81f69c-037a-4853-b6df-20dfcc48d13e-asg-MAGScoT_cleanbin_000009
title
jsCotTube1.Alphaproteobacteria_2
tolid