Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-11
ENA first public
ERC000050
ENA-CHECKLIST
The Sainsbury Laboratory
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23987800
SRA accession
e0470ed5-77d3-4c5f-92b6-636182c9c86b
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Bernard Bouffinier | Alain Gérault
collected_by
MNHN CONCARNEAU
collecting institution
2021-11-05
collection date
83.33
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.85
%
contamination score
adult lichen tissue
environmental medium
France
geographic location (country and/or sea)
48.23
DD
geographic location (latitude)
-4.57
DD
geographic location (longitude)
Finistère | CAMARET-SUR-MER | Pointe de Pen-Hir
geographic location (region and locality)
Marine rocky shore
habitat
not applicable
host life stage
Caloplaca littorea
host scientific name
not applicable
host sex
2972760
host taxid
Bernard Bouffinier | Alain Gérault
identified_by
MNHN CONCARNEAU
identifier_affiliation
metagenome-assembled genome
investigation type
Lichen: Caloplaca littorea
isolation_source
marine biome
local environmental context
lichen metagenome
metagenomic source
56
number of standard tRNAs extracted
Abditibacteriaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
COLLECTED BY HAND
sample collection device or method
SAMEA117993917
sample derived from
Abditibacteriaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
SL0000013
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
e0470ed5-77d3-4c5f-92b6-636182c9c86b-asg-MAGScoT_cleanbin_000015
title
glCalLitt1.Abditibacteriaceae_1
tolid