Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-11
ENA first public
ERC000047
ENA-CHECKLIST
The Sainsbury Laboratory
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23987815
SRA accession
8eda11dc-a72e-4878-a69f-fec2a7382ca9
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Bernard Bouffinier | Alain Gérault
collected_by
MNHN CONCARNEAU
collecting institution
2021-11-05
collection date
99.03
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.36
%
contamination score
adult lichen tissue
environmental medium
France
geographic location (country and/or sea)
48.23
DD
geographic location (latitude)
-4.57
DD
geographic location (longitude)
Finistère | CAMARET-SUR-MER | Pointe de Pen-Hir
geographic location (region and locality)
Marine rocky shore
habitat
not applicable
host life stage
Caloplaca littorea
host scientific name
not applicable
host sex
2972760
host taxid
Bernard Bouffinier | Alain Gérault
identified_by
MNHN CONCARNEAU
identifier_affiliation
metagenome-assembled genome
investigation type
Lichen: Caloplaca littorea
isolation_source
marine biome
local environmental context
lichen metagenome
metagenomic source
49
number of standard tRNAs extracted
Sphingomonas sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
COLLECTED BY HAND
sample collection device or method
SAMEA117993917
sample derived from
Sphingomonas sp.
scientific_name
Pacbio Sequel II
sequencing method
SL0000013
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
8eda11dc-a72e-4878-a69f-fec2a7382ca9-asg-MAGScoT_cleanbin_000001
title
glCalLitt1.Sphingomonas_sp_1
tolid