Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-11
ENA first public
ERC000050
ENA-CHECKLIST
University of California
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23988099
SRA accession
50db8404-ab22-4741-b8c3-0e39d09bb3c1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
LAURA PRIETO
collected_by
ICMAN-CSIC
collecting institution
2022-09-19T13:00:00
collection date
69.01
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.57
%
contamination score
adult jellyfish tissue
environmental medium
Spain
geographic location (country and/or sea)
36.53
DD
geographic location (latitude)
-6.21
DD
geographic location (longitude)
C√ÅDIZ | PUERTO REAL | ICMAN-CSIC
geographic location (region and locality)
LABORATORY
habitat
juvenile
host life stage
Cotylorhiza tuberculata
host scientific name
other
host sex
323337
host taxid
LAURA PRIETO
identified_by
ICMAN-CSIC
identifier_affiliation
metagenome-assembled genome
investigation type
Jellyfish: Cotylorhiza tuberculata
isolation_source
marine biome
local environmental context
jellyfish metagenome
metagenomic source
31
number of standard tRNAs extracted
Francisellaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Selected with pipettor from aquarium
sample collection method
SAMEA117994215
sample derived from
Francisellaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UCALI0000709
specimen_id
NOT_COLLECTED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
50db8404-ab22-4741-b8c3-0e39d09bb3c1-asg-MAGScoT_cleanbin_000018
title
jsCotTube1.Francisellaceae_1
tolid