Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-12
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23988178
SRA accession
45730344-c480-4d08-a9f3-477f441d9d8f
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-06-20
collection date
99.18
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.4
%
contamination score
1510
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
canyon
habitat
adult
host life stage
Chondrocladia robertballardi
host scientific name
not applicable
host sex
1688450
host taxid
PILAR RÌOS
identified_by
IEO, Spain
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Chondrocladia robertballardi
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
47
number of standard tRNAs extracted
Rubritalea sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
unknown
relationship
SAMEA117994262
sample derived from
Rubritalea sp.
scientific_name
Pacbio Sequel II
sequencing method
GHC0000284
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
45730344-c480-4d08-a9f3-477f441d9d8f-asg-MAGScoT_cleanbin_000019
title
odChoRobe1.Rubritalea_sp_1
tolid