Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-12
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23988226
SRA accession
60765589-c63b-4def-8d71-5b8fb26b3cf7
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2018-08-13
collection date
91.64
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.99
%
contamination score
241
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
fjord
habitat
adult
host life stage
Craniella zetlandica
host scientific name
not applicable
host sex
885873
host taxid
HANS TORE RAPP
identified_by
UiB, Norway
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Craniella zetlandica
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
56
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
beneficial
relationship
SAMEA117994305
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000286
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
60765589-c63b-4def-8d71-5b8fb26b3cf7-asg-MAGScoT_cleanbin_000173
title
odCraZetl1.Dehalococcoidia_49
tolid