Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-12
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23988668
SRA accession
d31d8665-159d-4565-9351-53eb1ee4eaf8
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
KATHRIN BUSCH
collected_by
GEOMAR
collecting institution
2017-08-04
collection date
95.71
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.19
%
contamination score
332
m
depth
adult sponge tissue
environmental medium
Germany
geographic location (country and/or sea)
54.19
DD
geographic location (latitude)
10.09
DD
geographic location (longitude)
Kiel | GEOMAR
geographic location (region and locality)
continental shelf
habitat
adult
host life stage
Petrosia crassa
host scientific name
not applicable
host sex
3115543
host taxid
HANS TORE RAPP
identified_by
UiB, Norway
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Petrosia crassa
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
47
number of standard tRNAs extracted
Dehalococcoidia bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
beneficial
relationship
SAMEA117994512
sample derived from
Dehalococcoidia bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000294
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
d31d8665-159d-4565-9351-53eb1ee4eaf8-asg-MAGScoT_cleanbin_000213
title
odPetCras1.Dehalococcoidia_19
tolid