Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-12
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23988851
SRA accession
556e3caf-d2fc-4768-925a-ad3317bc3f04
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
UNIVERSITY OF DERBY
barcoding center
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
Kate Quigley
collected_by
Australian Institute of Marine Science
collecting institution
2020-11-13
collection date
99.37
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
dinoflagellate culture
environmental medium
Australia
geographic location (country and/or sea)
5
m
geographic location (depth)
-18.57
DD
geographic location (latitude)
146.49
DD
geographic location (longitude)
Palm Islands | N.Orpheus(Yuioldsite)
geographic location (region and locality)
NA
habitat
not applicable
host life stage
Symbiodinium sp. 240 249
host scientific name
not applicable
host sex
2885083
host taxid
Kate Quigley, Sam Noonan
identified_by
Australian Insitute of Marine Science
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Symbiodinium sp. 240 249
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
56
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
2020-11-13
original collection date
Australia | Palm Islands | N.Orpheus(Yuioldsite)
original collection location
ASG
project name
SAMEA117994972
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000254
specimen_id
NA
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
556e3caf-d2fc-4768-925a-ad3317bc3f04-asg-bin.195
title
pySymSpec3.Rhodococcus_qingshengii_1
tolid