2025-04-14
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS23990210
SRA accession
SRR24825126_concoct_58
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_vv3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2019-04-29
collection date
65.51
%
completeness score
CheckM2_v1.0.1
completeness software
0.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR24825126 of study SRP441054.
description
oropharyngeal swab
environmental medium
Belgium
geographic location (country and/or sea)
51.26019700
DD
geographic location (latitude)
4.40277100
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human oral metagenome
isolation_source
oral cavity
local environmental context
human oral metagenome
metagenomic source
uncultured Atopobium sp.
organism
Metagenomic sequences of oropharyngeal swabs collected from the general population (n=32) and from men who have sex with men (n=64) in Antwerp, Belgium. Goal of sampling was the comparison of the oropharyngeal resistome between the general population, men who have sex with men who used antibiotics less than 6 months prior to sampling, and men who have sex with men who did not use antibiotics in the 6 months prior to sampling.
project name
SAMN35617809
sample derived from
uncultured Atopobium sp.
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR24825126_concoct_58
title