Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-14
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23997039
SRA accession
eafbf298-d657-4fa2-a983-9054ca6ef23f
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
J FROMMLET | M NITSCHKE | (isolated by C BRANDAO)
collected by
UNIVERSITY OF AVEIRO PORTUGAL
collecting institution
2020-09-02
collection date
97.34
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.32
%
contamination score
dinoflagellate culture
environmental medium
Portugal
geographic location (country and/or sea)
-23.44
DD
geographic location (latitude)
151.91
DD
geographic location (longitude)
Aveiro | Universidade de Aveiro
geographic location (region and locality)
adult
host life stage
Halluxium pauxillum
host scientific name
2705339
host taxid
T LAJEUNESSE
identified by
PENNSYLVANIA STATE UNIVERSITY (TRENCH COLLECTION) USA
identifier_affiliation
metagenome-assembled genome
investigation type
Dinoflagellate: Halluxium pauxillum
isolation_source
marine biome
local environmental context
dinoflagellate metagenome
metagenomic source
46
number of standard tRNAs extracted
Halieaceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA118003078
sample derived from
Halieaceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000043
specimen id
NOT PROVIDED
specimen voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
eafbf298-d657-4fa2-a983-9054ca6ef23f-asg-bin.2
title
pyHalPaux2.Halieaceae_1
tolid