2025-04-14
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS23996813
SRA accession
SRR27033637_concoct_97
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2022-06
collection date
86.82
%
completeness score
CheckM2_v1.0.1
completeness software
1.08
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR27033637 of study SRP475571.
description
saliva
environmental medium
China
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human oral metagenome
isolation_source
oral cavity
local environmental context
human oral metagenome
metagenomic source
uncultured Prevotella sp.
organism
Saliva samples from breeding workers at an integrated farm (chicken and duck) and two mono-farming farms (chicken farm and farm) in Jiaxing, Zhejiang Province, China. And saliva samples from the sampler before and after sampling on the same day.
project name
SAMN38505446
sample derived from
uncultured Prevotella sp.
scientific_name
Illumina HiSeq 4000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR27033637_concoct_97
title