Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-15
ENA first public
ERC000050
ENA-CHECKLIST
Nova Southeastern University
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23997061
SRA accession
1ffa72d2-5679-4117-a837-df43766531d5
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
JINGCHUN LI | RUIQI LI
collected_by
University of Colorado Boulder
collecting institution
2020-09-17
collection date
68.28
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0
%
contamination score
adult bivalve tissue
environmental medium
Marshall Islands
geographic location (country and/or sea)
not collected
DD
geographic location (latitude)
not collected
DD
geographic location (longitude)
Majuro | Marshall Islands Mariculture Farm
geographic location (region and locality)
NOT COLLECTED
habitat
juvenile
host life stage
Hippopus hippopus
host scientific name
hermaphrodite
host sex
80818
host taxid
JINGCHUN LI | RUIQI LI
identified_by
UNIVERSITY OF COLORADO BOULDER
identifier_affiliation
metagenome-assembled genome
investigation type
Bivalve: Hippopus hippopus
isolation_source
marine biome
local environmental context
mollusc metagenome
metagenomic source
51
number of standard tRNAs extracted
Delftia acidovorans
organism
WHOLE ORGANISM
organism part
ASG
project name
SAMEA118003120
sample derived from
Delftia acidovorans
scientific_name
Pacbio Sequel II
sequencing method
NSU0010303
specimen_id
NOT PROVIDED
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
1ffa72d2-5679-4117-a837-df43766531d5-asg-bin.20
title
xbHipHipp7.Delftia_acidovorans_1
tolid