Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-15
ENA first public
ERC000047
ENA-CHECKLIST
University of Rhode Island
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS23997058
SRA accession
f8f22865-57ee-4226-80e5-524c1dbe1d71
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Shawn Arellano
collected_by
Western Washington University
collecting institution
2021-06-04
collection date
94.57
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
1.59
%
contamination score
2167
m
depth
adult bivalve tissue
environmental medium
USA
geographic location (country and/or sea)
32.49
DD
geographic location (latitude)
-76.19
DD
geographic location (longitude)
Blake Ridge
geographic location (region and locality)
Cold seep
habitat
adult
host life stage
Bathymodiolus heckerae
host scientific name
not collected
host sex
114453
host taxid
Corinna Breusing
identified_by
University of Rhode Island
identifier_affiliation
metagenome-assembled genome
investigation type
Bivalve: Bathymodiolus heckerae
isolation_source
marine biome
local environmental context
mollusc metagenome
metagenomic source
40
number of standard tRNAs extracted
Candidatus Thioglobus sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA118003113
sample derived from
Candidatus Thioglobus sp.
scientific_name
Pacbio Sequel II
sequencing method
URI0000073
specimen_id
NOT PROVIDED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
f8f22865-57ee-4226-80e5-524c1dbe1d71-asg-MAGScoT_cleanbin_000004
title
xbBatHeck2.Thioglobus_sp_1
tolid