Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-17
ENA first public
ERC000047
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS24006998
SRA accession
ce316e97-3148-4033-ba51-5e135b4314bb
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
ROBERT VRIJENHOEK
collected_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
collecting institution
2000-08-14
collection date
94.3
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
3311
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
41.00
DD
geographic location (latitude)
-127.49
DD
geographic location (longitude)
Pacific Ocean off northern California | Gorda Ridge | NESCA Northern Escanaba Trough site
geographic location (region and locality)
hydrothermal vent
habitat
not collected
host life stage
Ridgeia piscesae
host scientific name
not collected
host sex
27915
host taxid
ROBERT VRIJENHOEK
identified_by
MONTEREY BAY AQUARIUM RESEARCH INSTITUTE
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Ridgeia piscesae
isolation_source
marine biome
local environmental context
annelid metagenome
metagenomic source
42
number of standard tRNAs extracted
Metamycoplasmataceae bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
SIO:BIC:A11988
proxy voucher
https://sioapps.ucsd.edu/collections/bi/catalog/A11988/
proxy voucher url
collected by the Remotely Operated Vehicle Tiburon
sample collection device or method
SAMEA118013055
sample derived from
Metamycoplasmataceae bacterium
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000255
specimen_id
NOT_APPLICABLE
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
ce316e97-3148-4033-ba51-5e135b4314bb-asg-MAGScoT_cleanbin_000004
title
wsRidPisc1.Metamycoplasmataceae_1
tolid
https://ror.org/04v7hvq31
voucher institution url