Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-22
ENA first public
ERC000047
ENA-CHECKLIST
University of Derby
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS24082410
SRA accession
ece15687-9c5b-438f-bffb-566ae4bc673d
Submitter Id
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
metaMDBG (version 0.3)
assembly software
NOT PROVIDED
barcoding center
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
Victor Bonito
collected_by
Reef Explorer Fiji
collecting institution
2021-06-30
collection date
96.0
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.94
%
contamination score
2
m
depth
adult coral tissue
environmental medium
Fiji
geographic location (country and/or sea)
-18.21
DD
geographic location (latitude)
177.69
DD
geographic location (longitude)
Viti Levu | Coral Coast
geographic location (region and locality)
reef flat moat
habitat
adult
host life stage
Dipsastraea pallida
host scientific name
not applicable
host sex
2723967
host taxid
Victor Bonito
identified_by
Reef Explorer Fiji
identifier_affiliation
metagenome-assembled genome
investigation type
Coral: Dipsastraea pallida
isolation_source
marine biome
local environmental context
coral metagenome
metagenomic source
55
number of standard tRNAs extracted
Rhodococcus qingshengii
organism
WHOLE ORGANISM
organism part
ASG
project name
hammer, chisel, screw driver
sample collection device or method
SAMEA118088279
sample derived from
Rhodococcus qingshengii
scientific_name
Pacbio Sequel II
sequencing method
UDUK0000336
specimen_id
FJTOL-2
specimen_voucher
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
ani_screen
taxonomic identity marker
ece15687-9c5b-438f-bffb-566ae4bc673d-asg-MAGScoT_cleanbin_000005
title
jaDipPall1.Rhodococcus_qingshengii_1
tolid