No
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-22
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS24082426
SRA accession
d43224e5-7571-45f5-b416-a1ff063689c7
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MetaBat (version 2.15); DASTOOL (version 1.1.5)
binning software
aquatic biome
broad-scale environmental context
WILLIAM GROSSMAN
collected_by
MARINE BIOLOGICAL LABORATORY
collecting institution
2024-04-10
collection date
9.44
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
0.0
%
contamination score
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
41.57
DD
geographic location (latitude)
-70.70
DD
geographic location (longitude)
Massachusettes | East Falmouth
geographic location (region and locality)
under a culvert bridge in 2' of water that has mostly sand and a few rocks. The area has good tidal flow.
habitat
juvenile
host life stage
Cliona celata
host scientific name
not provided
host sex
269049
host taxid
WILLIAM GROSSMAN
identified_by
MARINE BIOLOGICAL LABORATORY
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Cliona celata
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
2
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA118088294
sample derived from
Gammaproteobacteria bacterium
scientific_name
Pacbio Sequel II
sequencing method
GHC0000354
specimen_id
NOT COLLECTED
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
d43224e5-7571-45f5-b416-a1ff063689c7-asg-bin.86
title
odCliCela1.Gammaproteobacteria_3
tolid