2025-04-23
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS24082851
SRA accession
sam_MircrOlf_CC249
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'
adapters
497-512 dph
age
SeBiMER
broker name
Ifremer, Nofima
collecting institution
2022-06-27
collection_date
Mishal Cohen-Rengifo
collector name
Atlantic cod
common name
juvenile
dev_stage
laboratory facility (ENVO:01001406)
environment (biome)
biomaterial containment unit (ENVO:01001816)
environment (feature)
organ (ENVO:01000162)
environment (material)
none
environmental package
No
environmental_sample
heatwave treatment
experimental factor
Norway
geographic location (country and/or sea)
not applicable
geographic location (depth)
not applicable
geographic location (elevation)
not applicable
geographic location (latitude)
not applicable
geographic location (longitude)
Tromso
geographic location (region and locality)
metagenome
investigation type
tromso cod rosette
isolation_source
MPS12349601-G12
multiplex identifiers
Gadus morhua
organism
1F460F : 5'-ACACTCTTTCCCTACACGACGCTCTTCCGATCTACGGRAGGCAGCAG-3' ; 1R460R : 5'-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTACCAGGGTATCTAATCCT-3'
pcr primers
MircrOlf
project name
cod_rosette_tromso_climate_change_dnaextraction_metabarcoding
sample_description
CC249
sample_name
Gadus morhua
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
Gadus morhua
specific host
16S rRNA
target gene
V3-V4
target subfragment
olfactory rosette
tissue_type
cod nasal microbiota
title