2025-04-23
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS24082985
SRA accession
sam_MircrOlf_Sw-B2
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'
adapters
SeBiMER
broker name
Ifremer, Nofima
collecting institution
2022-04-06
collection_date
Mishal Cohen-Rengifo
collector name
seawater metagenome
common name
laboratory facility (ENVO:01001406)
environment (biome)
biomaterial containment unit (ENVO:01001816)
environment (feature)
seawater (ENVO:01001964)
environment (material)
none
environmental package
No
environmental_sample
ambient
experimental factor
France
geographic location (country and/or sea)
not applicable
geographic location (depth)
not applicable
geographic location (elevation)
not applicable
geographic location (latitude)
not applicable
geographic location (longitude)
Palavas
geographic location (region and locality)
metagenome
investigation type
brest seabass seawater
isolation_source
MPS12349601-G12
multiplex identifiers
seawater metagenome
organism
1F460F : 5'-ACACTCTTTCCCTACACGACGCTCTTCCGATCTACGGRAGGCAGCAG-3' ; 1R460R : 5'-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTACCAGGGTATCTAATCCT-3'
pcr primers
MircrOlf
project name
seawater_brest_ambient_dnaextraction_metabarcoding
sample_description
Sw-B2
sample_name
seawater metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
seawater bacterial community
title