2025-04-23
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS24082950
SRA accession
sam_MircrOlf_Rb43
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3'
adapters
388 dph
age
SeBiMER
broker name
Ifremer, Nofima
collecting institution
2022-04-06
collection_date
Mishal Cohen-Rengifo
collector name
European seabass
common name
juvenile
dev_stage
laboratory facility (ENVO:01001406)
environment (biome)
biomaterial containment unit (ENVO:01001816)
environment (feature)
organ (ENVO:01000162)
environment (material)
none
environmental package
No
environmental_sample
ambient
experimental factor
France
geographic location (country and/or sea)
not applicable
geographic location (depth)
not applicable
geographic location (elevation)
not applicable
geographic location (latitude)
not applicable
geographic location (longitude)
Brest
geographic location (region and locality)
metagenome
investigation type
brest seabass rosette
isolation_source
MPS12349601-G12
multiplex identifiers
Dicentrarchus labrax
organism
1F460F : 5'-ACACTCTTTCCCTACACGACGCTCTTCCGATCTACGGRAGGCAGCAG-3' ; 1R460R : 5'-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTACCAGGGTATCTAATCCT-3'
pcr primers
MircrOlf
project name
seabass_rosette_brest_ambient_dnaextraction_metabarcoding
sample_description
Rb43
sample_name
Dicentrarchus labrax
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
Dicentrarchus labrax
specific host
16S rRNA
target gene
V3-V4
target subfragment
olfactory rosette
tissue_type
seabass nasal microbiota
title