Yes
16S recovered
PROKKA (version 1.14.6)
16S recovery software
2025-04-23
ENA first public
ERC000050
ENA-CHECKLIST
Queen Mary University of London
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
Minimap2 (version 2.24-r1122)
MAG coverage software
ERS24082540
SRA accession
cf0ca461-50d9-453d-b320-bb8ec26d27b5
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaMDBG (version 0.3)
assembly software
coverage; graph
binning parameters
MAGScoT (version 1.0.0); MetaBat (version 2.15); MaxBin (version 2.2.7)
binning software
aquatic biome
broad-scale environmental context
GREG ROUSE
collected_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
collecting institution
2024-06-11
collection date
97.65
%
completeness score
checkM (version 1.2.2); checkM_DB (release 2015-01-16)
completeness software
3.53
%
contamination score
0
m
depth
adult annelid tissue
environmental medium
USA
geographic location (country and/or sea)
32.87
DD
geographic location (latitude)
-117.25
DD
geographic location (longitude)
California | San Diego | Scripps Institution of Oceanography at the University of California San Diego | Marine Biology Research Division | Hubbs Hall, Greg Rouse Laboratory
geographic location (region and locality)
freshwater
habitat
adult
host life stage
Lumbriculus variegatus
host scientific name
not collected
host sex
61662
host taxid
GREG ROUSE
identified_by
SCRIPPS INSTITUTION OF OCEANOGRAPHY AT THE UNIVERSITY OF CALIFORNIA SAN DIEGO
identifier_affiliation
metagenome-assembled genome
investigation type
Annelid: Lumbriculus variegatus
isolation_source
freshwater biome
local environmental context
annelid metagenome
metagenomic source
46
number of standard tRNAs extracted
Dichelobacter sp.
organism
WHOLE ORGANISM
organism part
ToL
project name
SAMEA118088420
sample derived from
Dichelobacter sp.
scientific_name
Pacbio Sequel II
sequencing method
QMOUL0000327
specimen_id
NOT APPLICABLE
specimen_voucher
N
symbiont
PROKKA (version 1.14.6)
tRNA extraction software
GTDB-TK (version 2.4.0); GTDB (release 214)
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
cf0ca461-50d9-453d-b320-bb8ec26d27b5-asg-MAGScoT_cleanbin_000004
title
wlLumVari6.Dichelobacter_sp_1
tolid