2025-05-18
ENA first public
ERC000050
ENA-CHECKLIST
BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
INSDC center name
public
INSDC status
bbmap v38.86
MAG coverage software
ERS24518243
SRA accession
K1855-m1-bin13
Submitter Id
0.5
L
amount or size of sample collected
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
Flye v2.9.1
assembly software
coverage and kmer
binning parameters
MetaBAT, MetaBAT2, MaxBin2
binning software
cell culture
broad-scale environmental context
2022-02-08
collection date
conserved marker genes
completeness approach
88.54
%
completeness score
CheckM v1.1.3
completeness software
2.19
%
contamination score
MMSeqs2 and GTDB R220
decontamination software
K1855-m1-bin13: from culture of Rhinomonas nottbecki K-1855
description
liquid water
environmental medium
Czech Republic
geographic location (country and/or sea)
48.9751483
DD
geographic location (latitude)
14.4574861
DD
geographic location (longitude)
mono-eukaryotic culture
isolation_source
cell culture of eukaryotic microbes
local environmental context
aquatic metagenome
metagenomic source
Limosilactobacillus reuteri
organism
PRJEB79909
project name
ERS21388238
sample derived from
Limosilactobacillus reuteri
scientific_name
GTDBTk v2.4.0
taxonomic classification
multi-marker approach
taxonomic identity marker
K1855-m1-bin13
title