2025-05-18
ENA first public
ERC000050
ENA-CHECKLIST
BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
INSDC center name
public
INSDC status
bbmap v38.86
MAG coverage software
ERS24518280
SRA accession
NI882-mx-bin01
Submitter Id
0.5
L
amount or size of sample collected
Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly quality
Flye v2.9.1
assembly software
coverage and kmer
binning parameters
MetaBAT, MetaBAT2, MaxBin2
binning software
cell culture
broad-scale environmental context
2022-02-10
collection date
conserved marker genes
completeness approach
99.29
%
completeness score
CheckM v1.1.3
completeness software
0.18
%
contamination score
MMSeqs2 and GTDB R220
decontamination software
NI882-mx-bin01: from culture of Rhodomonas lacustris NIVA-8/82
description
liquid water
environmental medium
Czech Republic
geographic location (country and/or sea)
48.9751483
DD
geographic location (latitude)
14.4574861
DD
geographic location (longitude)
mono-eukaryotic culture
isolation_source
cell culture of eukaryotic microbes
local environmental context
aquatic metagenome
metagenomic source
Flavobacterium sp.
organism
PRJEB79909
project name
ERS21388241
sample derived from
Flavobacterium sp.
scientific_name
GTDBTk v2.4.0
taxonomic classification
multi-marker approach
taxonomic identity marker
NI882-mx-bin01
title