2025-05-18
ENA first public
ERC000050
ENA-CHECKLIST
BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY
INSDC center name
public
INSDC status
bbmap v38.86
MAG coverage software
ERS24518194
SRA accession
C9799-m1-bin10
Submitter Id
0.5
L
amount or size of sample collected
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
Flye v2.9.1
assembly software
coverage and kmer
binning parameters
MetaBAT, MetaBAT2, MaxBin2
binning software
marine biome
broad-scale environmental context
2020-09-16
collection date
conserved marker genes
completeness approach
99.02
%
completeness score
CheckM v1.1.3
completeness software
1.37
%
contamination score
MMSeqs2 and GTDB R220
decontamination software
C9799-m1-bin10: from culture of Rhodomonas baltica CCAP 979/9
description
liquid water
environmental medium
United Kingdom
geographic location (country and/or sea)
56.4513
DD
geographic location (latitude)
-5.4404
DD
geographic location (longitude)
eukaryotic culture
isolation_source
tidal pool
local environmental context
aquatic metagenome
metagenomic source
Parasphingorhabdus sp.
organism
PRJEB55799 
project name
SAMEA8100079
sample derived from
Parasphingorhabdus sp.
scientific_name
GTDBTk v2.4.0
taxonomic classification
multi-marker approach
taxonomic identity marker
C9799-m1-bin10
title