2025-05-20
ENA first public
ERC000047
ENA-CHECKLIST
ETH Zuerich
INSDC center name
public
INSDC status
ERS22577333
SRA accession
Candidatus Entotheonella serta TSWB1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
For the binning, the quality-controlled paired-end reads were aligned to the assembled scaffolds using BWA97 (v0.7.17), then filtered with a Python script for an identity of at least 97%, an alignment length of 200bp and a minimum alignment coverage of 90% of the read length. The alignments were then sorted by SAMtools98 (v1.9). Coverage depth across the scaffolds was calculated using the MetaBAT299 (v2.12.1) jgi_summarize_bam_contig_depths script and this information was then used by MetaBAT2 to bin the scaffolds with default parameters.
binning parameters
BWA (v0.7.17), python script for filtering, SAMtools (v1.9) and MetaBAT2 (v2.12.1)
binning software
ENVO_00000447
broad-scale environmental context
2014
collection date
93.96
%
completeness score
CheckM
completeness software
7.79
%
contamination score
MAG from Candidatus Entotheonella serta TSWB1
description
ENVO_00002010
environmental medium
Israel
geographic location (country and/or sea)
29.49
DD
geographic location (latitude)
34.92
DD
geographic location (longitude)
sponge tissue
isolation_source
PORO_0000001
local environmental context
sponge metagenome
metagenomic source
Candidatus Entotheonella serta
organism
Chemical Richness and Diversity of Uncultivated �Entotheonella� Symbionts in Marine Sponges
project name
ERS22564645
sample derived from
Candidatus Entotheonella serta
scientific_name
Multi-Locus Sequence Analysis
taxonomic identity marker
Sample of Candidatus Entotheonella serta TSWB1
title