SAMN48523167
External Id
SARS-CoV-2/Wastewater/USA/PHL2-VH-A-F04-20240802/2024
External Id
Philadelphia Public Health Laboratory
INSDC center name
2025-05-15T00:00:00Z
INSDC first public
2025-05-15T11:35:29.563Z
INSDC last update
SRS25050258
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS25050258
SRA accession
Philadelphia Water Department
collected_by
2024-07-21
collection_date
NE WPCP
collection_site_id
ceres nanotrap
concentration_method
murine hepatitis virus
extraction_control
thermo magmax wastewater ultra nucleic acid isolation kit
extraction_method
USA: Pennsylvania, Philadelphia
geo_loc_name
EPI_ISL_19873642
gisaid_accession
hCoV-19/env/USA/PA-PHL2-VH-Merged-H01-0802/2024
gisaid_virus_name
WW-2024-07-22-NorthEast
isolate
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
CDC NWSS
project_name
public health surveillance community-level
purpose_of_ww_sampling
SARS-CoV-2 surveillance
purpose_of_ww_sequencing
Philadelphia Public Health Laboratory
sequenced_by
biological replicate
specimen_processing
Composite sample was aliquoted into 10 mL biological replicates before concentration, extraction, and sequencing (see specimen_processing_id)
specimen_processing_details
WW-2024-07-22-NorthEast-Rep2
specimen_processing_id
SARS-CoV-2 from wastewater in Philadelphia
title
1004057
ww_population
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
PH
ww_surv_jurisdiction
WW-240721-240731-NE
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
78244.24
ww_surv_target_1_conc
copies/L wastewater
ww_surv_target_1_conc_unit
N gene (N2)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
ddPCR detection of SARS-CoV-2 using the BioRad PREvalence Kit on the BioRad QX200
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
41581.4
ww_surv_target_2_conc
copies/L wastewater
ww_surv_target_2_conc_unit
E gene (orf4)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
ddPCR detection of SARS-CoV-2 using the BioRad PREvalence Kit on the BioRad QX200
ww_surv_target_2_protocol