6722928
16s rrna gene copies per mg tissue of halichondribacter symbioticus
9630103
16s rrna gene copies per mg tissue of the total bacterial community
2025-06-05
ENA first public
ERC000011
ENA-CHECKLIST
Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research
INSDC center name
public
INSDC status
ERS20535347
SRA accession
151129:151170e6-d77e-4465-b30c-13b1549c7c0c
Submitter Id
GFBIO
broker name
2023-04-04
collection date
sequences were generated in mixed orientation, separate read files submitted for each orientation (here: R1 file contains forward reads)
comment
tissue of demosponge Halichondria panicea Fahrensodde
description
brackish water [ENVO:00002019]
environment (biome)
artificial harbor [ENVO:00000464]
environment (feature)
tissue [UBERON:0000479]
environment (material)
host-associated
environmental package
Yes
environmental_sample
FS10_lib1
experiment_id
Germany
geographic location (country and/or sea)
1.5
m
geographic location (depth)
54.823805
DD
geographic location (latitude)
9.474667
DD
geographic location (longitude)
Fahrensodde
geographic location (region and locality)
host-associated
host-associated environmental package
mimarks-specimen
investigation type
DNeasy PowerSoil Pro Kit, Cat. No. / ID: 47014
nucleic acid extraction
sponge metagenome
organism
FWD:CCTAYGGGRBGCASCAG REV:GGACTACNNGGGTATCTAAT
pcr primers
Baltic Halichondria microbiome
project name
18.05
psu
salinity
rinsed with sterile seawater, cleaned of algae and other contaminats, frozen at -80 degrees C
sample material processing
tissue of demosponge Halichondria panicea Fahrensodde
sample_description
sponge metagenome
scientific_name
Illumina MiSeq
sequencing method
true
submitted to insdc
V3-V4
target subfragment
6
temp
FS10
title
1.5
m
total depth of water column