5228039
16s rrna gene copies per mg tissue of halichondribacter symbioticus
1586316
16s rrna gene copies per mg tissue of the total bacterial community
2025-06-05
ENA first public
ERC000011
ENA-CHECKLIST
Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research
INSDC center name
public
INSDC status
ERS20535357
SRA accession
151119:151170e6-d77e-4465-b30c-13b1549c7c0c
Submitter Id
GFBIO
broker name
2018-05-18
collection date
sequences were generated in mixed orientation, separate read files submitted for each orientation (here: R1 file contains forward reads)
comment
tissue of demosponge Halichondria panicea Utere Vattenholmen
description
brackish water [ENVO:00002019]
environment (biome)
area of rocky shore [ENVO:01000428]
environment (feature)
tissue [UBERON:0000479]
environment (material)
host-associated
environmental package
Yes
environmental_sample
US10_lib1
experiment_id
Sweden
geographic location (country and/or sea)
2
m
geographic location (depth)
58.877944
DD
geographic location (latitude)
11.114694
DD
geographic location (longitude)
Utere Vattenholmen
geographic location (region and locality)
host-associated
host-associated environmental package
mimarks-specimen
investigation type
DNeasy PowerSoil Pro Kit, Cat. No. / ID: 47014
nucleic acid extraction
sponge metagenome
organism
FWD:CCTAYGGGRBGCASCAG REV:GGACTACNNGGGTATCTAAT
pcr primers
Baltic Halichondria microbiome
project name
28.3
psu
salinity
rinsed with sterile seawater, cleaned of algae and other contaminats, stored in RNA Later, frozen at -80 degrees C
sample material processing
tissue of demosponge Halichondria panicea Utere Vattenholmen
sample_description
sponge metagenome
scientific_name
Illumina MiSeq
sequencing method
true
submitted to insdc
V3-V4
target subfragment
14
temp
US10
title
2
m
total depth of water column