2025-06-09
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS24830886
SRA accession
SRR9649756_binner23_Refined_3
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.3
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
marine
broad-scale environmental context
EBI-EMG
broker name
not provided
collection date
81.21
%
completeness score
CheckM2_v1.0.1
completeness software
1.25
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR9649756 of study SRP213361.
description
marine sediment
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
hydrocarbon seep
local environmental context
marine sediment metagenome
metagenomic source
uncultured Thermoplasmata archaeon
organism
We intended to examine the response of microbial communities to the natural hydrocarbon seepages in sediments of Gulf of Mexico, through both gene-centric and genome-centric analysis of metagenomic sequencing data.
project name
SAMN12227484
sample derived from
uncultured Thermoplasmata archaeon
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR9649756_binner23_Refined_3
title