2025-06-10
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS24931852
SRA accession
ERR2919990_binner12_Refined_4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
marine polar
broad-scale environmental context
EBI-EMG
broker name
2014-11
collection date
55.09
%
completeness score
CheckM2_v1.0.1
completeness software
0.46
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2919990 of study ERP112211.
description
marine sediment
environmental medium
Antarctica
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
volcanic bay
local environmental context
sediment metagenome
metagenomic source
uncultured Comamonadaceae bacterium
organism
In the 20th century, Whalers Bay of Deception Island, Maritime Antarctica, was known as a port where whalers have established for processing whale oil. At present, the island is one of the most visited by tourists. The extent of the anthropogenic impact of human activities is unknown, and there are no studies on microbial resistance/tolerance mechanisms at Whalers Bay. Therefore, this work aimed to investigate the resistome profiles along a biofilm formed on top of sediments at Whalers Bay using metagenomics. The research team of MycoAntar Project collected the sediment samples during the summer 2014-15. Total DNA extraction of four samples along a transect of 27.5 m was performed in duplicate, followed by sequencing using the Illumina HiSeq platform.
project name
SAMEA5096392
sample derived from
uncultured Comamonadaceae bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERR2919990_binner12_Refined_4
title