2025-06-11
ENA first public
ERC000033
ENA-CHECKLIST
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
INSDC center name
public
INSDC status
ERS24612693
SRA accession
USUV_GridION_run12_bc05
Submitter Id
ERASMUS MC, UNIVERISTY MEDICAL CENTER
broker name
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collecting institution
2017-09-07
collection date
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collector name
Usutu virus
common name
Samples from free-ranging birds testing RT-PCR positive for Usutu virus (CT values below 32) were subjected to whole-genome sequencing using an amplicon-based Oxford Nanopore approach.
description
Netherlands
geographic location (country and/or sea)
51.3548
DD
geographic location (latitude)
5.16489
DD
geographic location (longitude)
Noord-Brabant, Reusel
geographic location (region and locality)
Eurasian Blackbird
host common name
recovered
host disease outcome
not provided
host health state
Turdus merula
host scientific name
not provided
host sex
17TV1446_S
host subject id
USUV/NL/2017/17TV1446_S
isolate
throat cloacal swab
isolation source host-associated
Usutu virus
organism
Münger et al. (preprint, 2024) Emergence and Dynamics of Usutu and West Nile Viruses in the Netherlands, 2016-2022
publication
active surveillance not initiated by an outbreak
sample capture status
Usutu virus
scientific_name
Host-derived Usutu virus, live free-ranging bird, the Netherlands
title