2025-06-11
ENA first public
ERC000033
ENA-CHECKLIST
OR573992
INSDC accession
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
INSDC center name
public
INSDC status
ERS24612696
SRA accession
USUV_GridION_run12_bc08
Submitter Id
ERASMUS MC, UNIVERISTY MEDICAL CENTER
broker name
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collecting institution
2017-08-14
collection date
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collector name
Usutu virus
common name
Samples from birds in captivity testing RT-PCR positive for Usutu virus (CT values below 32) were subjected to whole-genome sequencing using an amplicon-based Oxford Nanopore approach.
description
Netherlands
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
Limburg
geographic location (region and locality)
Red-breasted Goose
host common name
dead
host disease outcome
not applicable
host health state
Branta ruficollis
host scientific name
not provided
host sex
AS201700144
host subject id
USUV/NL/2017/AS201700144
isolate
brain
isolation source host-associated
Usutu virus
organism
Giglia et al. (2024); PMID: 38329634
publication
active surveillance not initiated by an outbreak
sample capture status
Usutu virus
scientific_name
Host-derived Usutu virus, bird deceased in captivity, the Netherlands
title