2025-06-12
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS24937421
SRA accession
SRR12059192_binner123_Refined_2
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
marine
broad-scale environmental context
EBI-EMG
broker name
2013
collection date
80.93
%
completeness score
CheckM2_v1.0.1
completeness software
2.25
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12059192 of study SRP068645.
description
marine sediment
environmental medium
Denmark
geographic location (country and/or sea)
56.62016667
DD
geographic location (latitude)
11.67066666
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
deep subsurface sediment
local environmental context
sediment metagenome
metagenomic source
Candidatus Bathyarchaeota archaeon
organism
Metagenomes were sequenced from sediment samples collected during the International Ocean Discovery Program Expedition 347, "Baltic Sea Paleoenvironment". The sediments were retrieved from as far as 84.4 meters below the seafloor. They vary in age, organic carbon content, salinity, and other parameters that reflect the changing Baltic environment during the transition from the last ice age and throughout the Holocene. The Baltic Sea environment has a very dynamic history, having transitioned from a period of freshwater and low organic carbon deposition during the last glaciation to the modern Holocene period of brackish-marine water and high organic carbon. These climatic changes are reflected in the sediment record, and IODP 347 in 2013 was the first-ever scientific drilling expedition to the Baltic to retrieve high-resolution sediment cores documenting this history. The Baltic Sea is thus an excellent natural laboratory for understanding how microbial communities may shift in response to changing conditions in the deep subsurface.
project name
SAMN04395456
sample derived from
Candidatus Bathyarchaeota archaeon
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR12059192_binner123_Refined_2
title