2025-06-12
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA113592217
External Id
MAX PLANCK INSTITUTE BIOLOGY TUEBINGEN
INSDC center name
2023-06-12T11:29:54Z
INSDC last update
public
INSDC status
ERS15586868
SRA accession
MI-096-H__metabat2_low_PE.016
Submitter Id
Many fragments with little no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes v.3.12.0
assembly software
--minContig 2000 --minCV 0.5 --minCVSum 0.5 --maxP 92 --maxEdges 150 --seed 8394
binning parameters
MetaBAT2 v.2.12.1
binning software
Homo sapiens
broad-scale environmental context
2014-07-01
collection date
CheckM v.1.0.13
completeness software
fecal material
environmental medium
Colombia
geographic location (country and/or sea)
4.624335
geographic location (latitude)
-74.063644
geographic location (longitude)
metagenome-assembled genome
investigation type
human metagenome
isolation_source
digestive tract
local environmental context
human gut metagenome
metagenomic source
Bifidobacterium longum subsp. longum JCM 1217
organism
PRJEB58436
project name
ERS14606617
sample derived from
Bifidobacterium longum subsp. longum JCM 1217
scientific_name
Illumina HiSeq
sequencing method
multi-marker
taxonomic identity marker
Col_Meta__MI-096-H__metabat2_low_PE.016
title