2025-06-12
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS24937368
SRA accession
SRR15668621_metabat2_8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
marine
broad-scale environmental context
EBI-EMG
broker name
2013-05-07
collection date
76.88
%
completeness score
CheckM2_v1.0.1
completeness software
0.38
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15668621 of study SRP334707.
description
marine sediment
environmental medium
Pacific Ocean
geographic location (country and/or sea)
33.78898000
DD
geographic location (latitude)
-118.66795800
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
methane seep sediments
local environmental context
sediment metagenome
metagenomic source
uncultured bacterium
organism
Biological anaerobic oxidation of methane (AOM) coupled to sulfate reduction represents a large methane sink in global ocean sediments. Methane consumption is carried out by syntrophic archaeal-bacterial consortia and fuels an unique ecosystem, yet these slow growing interactions in the syntrophic consortia and between the associated community members remain poorly understood. We established in vitro enrichments performing AOM with sulfate by selecting and cultivating microbes of interest based on size, density and metabolism. By analysing community composition of the enrichments and single aggregates, we shed light on the microbial assemblage that thrive on methane and could be physically associated together. These in vitro enrichments will serve as the model system to study microbial interactions in marine methane seeps.
project name
SAMN21037849
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR15668621_metabat2_8
title