2025-06-12
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS24935306
SRA accession
SRR12887798_binner12_Refined_34
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
marine
broad-scale environmental context
EBI-EMG
broker name
2017-03-05
collection date
59.69
%
completeness score
CheckM2_v1.0.1
completeness software
2.05
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12887798 of study SRP287332.
description
marine sediment
environmental medium
Pacific Ocean
geographic location (country and/or sea)
11.32500000
DD
geographic location (latitude)
142.19100000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
hadal zone
local environmental context
sediment metagenome
metagenomic source
uncultured bacterium
organism
In order to study the metabolic potential of microbes in trench sediments, we sequenced metagenomes and metatranscriptomes of the Challenger Deep sediment samples. Furthermore, we reconstructed microbial genomes from the generated sequencing data and studied the ecological role of the microbes.
project name
SAMN16252667
sample derived from
uncultured bacterium
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR12887798_binner12_Refined_34
title