2025-06-12
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS24937412
SRA accession
SRR5189788_binner123_Refined_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
deepsea oligotrophic marine
broad-scale environmental context
EBI-EMG
broker name
2011-11-08
collection date
82.48
%
completeness score
CheckM2_v1.0.1
completeness software
1.96
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5189788 of study SRP097175.
description
marine sediment
environmental medium
Atlantic Ocean
geographic location (country and/or sea)
22.80000000
DD
geographic location (latitude)
-46.05000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
oxic anoxic transition zone
local environmental context
sediment metagenome
metagenomic source
uncultured bacterium
organism
Microbial metabolism in the oxic/anoxic transition zones (OATZ) of sediments can serve as a barrier preventing the emission of nutrients and greenhouse gases diffusing upwards to the overlying water column. However, microbial diversity and activities in this transition zone are not well understood. Here we propose to employ metagenomic shotgun DNA sequencing on three representative samples from oligotrophic sediment columns retrieved from North Pond during IODP Expedition 336. These sediments offer a unique opportunity to explore the OATZ in oligotrophic sediments, and are characterized by both an upper a lower OATZ. In short we aim at: elucidating the identity to the owners of functional genes that are not “accounted” for in the 16S rRNA libraries. Investigate the genomic inventory of uncharacterized sedimentary lineages of putative archaeal ammonium oxidizers. Expand the current knowledge of the microbial community and its potential activity in the OATZ.
project name
SAMN06240273
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 1000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR5189788_binner123_Refined_1
title