SAMN48711167
External Id
G10K
INSDC center name
2025-05-23T00:00:00Z
INSDC first public
2025-05-28T18:02:20.340Z
INSDC last update
SRS25183389
INSDC secondary accession
live
INSDC status
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
114-20
Oregon Scientific Permit Number
SRS25183389
SRA accession
Polk, digestive system
Tube ID
University of Washington: Adam Leache
biomaterial_provider
Mark Leppin, R. Bruce Bury
collected_by
2020-07-15
collection_date
The tailed frog (Ascaphus truei) is one of two species of frogs in the genus Ascaphus, the only taxon in the family Ascaphidae. The tail is one of two distinctive anatomical features adapting the species to life in fast-flowing streams. The two species are the only North American frog species that reproduce by internal fertilization (from Wikipedia entry). This sample of a male individual found at the Luckiamute River in Polk County, Oregon, USA, was coordinated by Gwendolynn W. Bury (Oregon State University) and R. Bruce Bury (U.S. Geological Survey) to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). The individual was collected by Mark Leppin (Oregon State University) under Oregon Scientific Permit #114-20, and the sample was dissected by Adam Leache (University of Washington). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
description
adult
dev_stage
USA: Polk County, Oregon
geo_loc_name
aAscTru1
isolate
44.796144 N 123.527922 W
lat_lon
Ascaphus truei
http://purl.obolibrary.org/obo/NCBITaxon_8439
organism
male
sex
-80oC
store_cond
gut
tissue
Animal sample from Ascaphus truei (tailed frog) for VGP transcriptome, aAscTru1 - gut
title
flash frozen, liquid nitrogen
treatment