2025-06-21
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25068196
SRA accession
SRR5469033_concoct_106
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.11.1
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
marine sediment
broad-scale environmental context
EBI-EMG
broker name
2014-07-10
collection date
77.34
%
completeness score
CheckM2_v1.0.1
completeness software
2.28
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5469033 of study SRP105005.
description
marine sediment
environmental medium
USA
geographic location (country and/or sea)
39.55000000
DD
geographic location (latitude)
-72.40000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
sediment metagenome
isolation_source
submarine canyon
local environmental context
sediment metagenome
metagenomic source
uncultured bacterium
organism
Metagenomic sequencing of methane-oxidizing mesocosms from the Gulf of Mexico and Hudson Canyon
project name
SAMN06266212
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR5469033_concoct_106
title