2025-07-06
ENA first public
ERC000011
ENA-CHECKLIST
SAMEA114009101
External Id
Frontier Science Center for Stem Cell Research, Tongji University, Shanghai 200092, China.
INSDC center name
2023-07-10T15:37:59Z
INSDC last update
public
INSDC status
ERS15992967
SRA accession
E-MTAB-10593_2:B39-REP2
Submitter Id
ArrayExpress
broker name
MC38
cell_line
not collected
collection date
house mouse
common name
Protocols: After the 1000u/ml IFN-β stimulation for 48 hours, the tumor were collected and lysed in order to extract the cell nucleus. The DNA in the nucles was processed by transposition reaction using Tn5 Transposase and purified follow the instructions. Adapters in the reads were trimmed using fastp (PMID 30423086) with the “--detect_adapter_for_pe” flag. The trimmed reads were aligned to the mouse reference genome (mm10) using hisat2 (PMID 3137580) with the “--no-temp-splicesite --no-spliced-alignment” flags.
description
colon carcinoma
disease
Bap1 knockout
genotype
not collected
geographic location (country and/or sea)
not applicable
isolate
Mus musculus
organism
Mus musculus
organism
colon
organism part
Mus musculus
scientific_name
B39-REP2
title