2025-07-14
ENA first public
ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
public
INSDC status
ERS25227988
SRA accession
SAMPLE_118_concoct_bin.2
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
93.56
%
completeness score
EukCC_v0.2
completeness software
1.12
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR1631103, SRR1631104, SRR1631105, SRR1631106, SRR1631107, SRR1631108, SRR3187753, SRR3188277 of study SRP002480.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Mb-R,Mb-C
local environmental context
human skin metagenome
metagenomic source
Malassezia restricta
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060456
sample derived from
Malassezia restricta
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_118_concoct_bin.2
title