2025-07-14
ENA first public
ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
public
INSDC status
ERS25228241
SRA accession
SAMPLE_2817_concoct_bin.32
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
84.9
%
completeness score
EukCC_v0.2
completeness software
2.53
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR14332516, SRR14332517, SRR14332538, SRR14332539, SRR14332563, SRR14332562, SRR14198843, SRR14198844, SRR14198845 of study SRP314237.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Vf,Ra,Ac,N
local environmental context
human skin metagenome
metagenomic source
Rhodotorula sp. JG-1b
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060587
sample derived from
Rhodotorula sp. JG-1b
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_2817_concoct_bin.32
title