2025-07-14
ENA first public
ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
public
INSDC status
ERS25227950
SRA accession
SAMPLE_30_concoct_bin.8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
95.14
%
completeness score
EukCC_v0.2
completeness software
1.77
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR14198835, SRR1622818, SRR3187095, SRR3187183, SRR3187184, SRR3187185, SRR3187186, SRR3187187 of studies SRP314237, SRP002480.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Ra,Ra-R
local environmental context
human skin metagenome
metagenomic source
Malassezia sp.
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060603
sample derived from
Malassezia sp.
scientific_name
Illumina NovaSeq 6000,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_30_concoct_bin.8
title