2025-07-14
ENA first public
ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
public
INSDC status
ERS25228111
SRA accession
SAMPLE_990_concoct_bin.4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
2013-01-16
collection date
89.36
%
completeness score
EukCC_v0.2
completeness software
1.64
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic run SRR1631007 of study SRP002480.
description
Ss
environmental medium
USA
geographic location (country and/or sea)
38.984652
DD
geographic location (latitude)
-77.094709
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Gb-C
local environmental context
human skin metagenome
metagenomic source
Malassezia restricta
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
SRS731415
sample derived from
Malassezia restricta
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_990_concoct_bin.4
title