ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25218568
SRA accession
SAMPLE_307_bin.1
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
2013-04-29
collection date
96.71
%
completeness score
CheckM_v1.1.2
completeness software
0.16
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR1632437, SRR1632438, SRR1632439, SRR1632440, SRR1632441, SRR1632442, SRR1632443, SRR1632444, SRR1632445, SRR1632446, SRR1632447, SRR1632448, SRR1632449, SRR1632450 of study SRP002480.
description
Ss
environmental medium
USA
geographic location (country and/or sea)
38.984652
DD
geographic location (latitude)
-77.094709
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Ac-R
local environmental context
human skin metagenome
metagenomic source
Cutibacterium acnes
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
SRS731954
sample derived from
Cutibacterium acnes
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_307_bin.1
title