ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25220719
SRA accession
SAMPLE_2707_bin.2
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
2018-02-01
collection date
86.07
%
completeness score
CheckM_v1.1.2
completeness software
0.0
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic run SRR9668966 of study SRP214169.
description
skin swab
environmental medium
France
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Arm (3x5cm)
local environmental context
human skin metagenome
metagenomic source
Staphylococcus saccharolyticus
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
SRS5084670
sample derived from
Staphylococcus saccharolyticus
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_2707_bin.2
title