ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25217877
SRA accession
SAMPLE_98_bin.2
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
82.84
%
completeness score
CheckM_v1.1.2
completeness software
1.74
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR3183801, SRR3183802, SRR3183803, SRR3183804, SRR3183909, SRR3183910, SRR3183911, SRR3183912 of study SRP002480.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Fh-R
local environmental context
human skin metagenome
metagenomic source
Corynebacterium tuberculostearicum
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060663
sample derived from
Corynebacterium tuberculostearicum
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_98_bin.2
title