ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25217896
SRA accession
SAMPLE_105_bin.4
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
66.74
%
completeness score
CheckM_v1.1.2
completeness software
0.93
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR3183880, SRR3183881, SRR3183882, SRR3184002, SRR3184003, SRR3184004, SRR3184005 of study SRP002480.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Ph-L,Ph-R
local environmental context
human skin metagenome
metagenomic source
Staphylococcus warneri
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060444
sample derived from
Staphylococcus warneri
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_105_bin.4
title