ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25218947
SRA accession
SAMPLE_564_bin.8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
2014-04-02
collection date
69.28
%
completeness score
CheckM_v1.1.2
completeness software
0.0
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR3187763, SRR3187764, SRR3187765, SRR3187766, SRR3187767, SRR3187768, SRR3187769, SRR3187770, SRR3187771 of study SRP002480.
description
Ss
environmental medium
USA
geographic location (country and/or sea)
38.984652
DD
geographic location (latitude)
-77.094709
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Hp-R
local environmental context
human skin metagenome
metagenomic source
Fannyhessea vaginae
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
SRS1310458
sample derived from
Fannyhessea vaginae
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_564_bin.8
title