ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25219405
SRA accession
SAMPLE_882_bin.18
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
2019-02
collection date
64.43
%
completeness score
CheckM_v1.1.2
completeness software
1.95
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic run SRR14198836 of study SRP314237.
description
swab
environmental medium
USA
geographic location (country and/or sea)
38.999838
DD
geographic location (latitude)
-77.106017
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Vf
local environmental context
human skin metagenome
metagenomic source
uncultured Porphyromonas sp.
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
SRS8671946
sample derived from
uncultured Porphyromonas sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_882_bin.18
title