ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25218017
SRA accession
SAMPLE_130_bin.1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
97.64
%
completeness score
CheckM_v1.1.2
completeness software
3.47
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR1631301, SRR1631302, SRR1631303, SRR1631304, SRR1631305, SRR1631306, SRR1631307, SRR3184394, SRR3184395, SRR3191669 of study SRP002480.
description
Skin wash
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Ea-L,Ea-R
local environmental context
human skin metagenome
metagenomic source
Cutibacterium acnes
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060469
sample derived from
Cutibacterium acnes
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_130_bin.1
title