ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25221647
SRA accession
SAMPLE_2777_bin.6
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
97.1
%
completeness score
CheckM_v1.1.2
completeness software
0.12
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR3182032, SRR3182033, SRR3182034, SRR3182035, SRR3182036, SRR3183283, SRR3183284, SRR3183285, SRR3183592, SRR3183593, SRR3183594, SRR3183595, SRR3183596, SRR3183880, SRR3183881, SRR3183882, SRR3184338, SRR3184339, SRR3184340, SRR3184498, SRR3184499, SRR3185149, SRR3185150, SRR3185151, SRR3185152, SRR3185153, SRR3187139, SRR3187140, SRR3187141, SRR3187142, SRR3187143, SRR3188124, SRR3189150, SRR3189151, SRR3189152, SRR3189153, SRR3189154, SRR3191617, SRR3191618, SRR3191619, SRR3191620, SRR3191621, SRR3191699, SRR3191700, SRR3191701, SRR3191702, SRR3191703 of study SRP002480.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Ph-L,Ph-R
local environmental context
human skin metagenome
metagenomic source
Staphylococcus capitis
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060563
sample derived from
Staphylococcus capitis
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_2777_bin.6
title