ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25220735
SRA accession
SAMPLE_2714_bin.1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
2016
collection date
99.15
%
completeness score
CheckM_v1.1.2
completeness software
0.17
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic run SRR9680484 of study SRP214545.
description
skin surface
environmental medium
Germany
geographic location (country and/or sea)
51.15
DD
geographic location (latitude)
6.48
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
missing: third party data
local environmental context
human skin metagenome
metagenomic source
Staphylococcus aureus
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
SRS5093728
sample derived from
Staphylococcus aureus
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_2714_bin.1
title