ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25222257
SRA accession
SAMPLE_2815_bin.1
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
95.0
%
completeness score
CheckM_v1.1.2
completeness software
0.59
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR14332511, SRR14332510, SRR14332556, SRR14332557, SRR14198837, SRR14198838, SRR14198839 of study SRP314237.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Vf,Ra,Ac,N
local environmental context
human skin metagenome
metagenomic source
Lawsonella clevelandensis
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060585
sample derived from
Lawsonella clevelandensis
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_2815_bin.1
title