ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25247074
SRA accession
SAMPLE_11_bin.5
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
86.15
%
completeness score
CheckM_v1.1.2
completeness software
0.17
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR14332498, SRR14332499, SRR14332522, SRR14332523, SRR14332544, SRR14332545, SRR1620021 of studies SRP314237, SRP002480.
description
Skin wash,Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
N-R,N
local environmental context
human skin metagenome
metagenomic source
Staphylococcus epidermidis
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060449
sample derived from
Staphylococcus epidermidis
scientific_name
Illumina NovaSeq 6000,Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_11_bin.5
title