ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25218076
SRA accession
SAMPLE_142_bin.8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
76.34
%
completeness score
CheckM_v1.1.2
completeness software
1.18
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR1631360, SRR1631361, SRR1631362, SRR1631363, SRR1631364, SRR1631365, SRR3184495, SRR3184496, SRR3184793, SRR3184794 of study SRP002480.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
Tw-R
local environmental context
human skin metagenome
metagenomic source
Corynebacterium jeikeium
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060480
sample derived from
Corynebacterium jeikeium
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_142_bin.8
title