ERC000050
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
ERS25218053
SRA accession
SAMPLE_136_bin.4
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes_v3.13.0
assembly software
--maxbin2 --metabat2 --concoct
binning parameters
metaWRAP_v1.2.1
binning software
human skin
broad-scale environmental context
not applicable
collection date
95.0
%
completeness score
CheckM_v1.1.2
completeness software
0.0
%
contamination score
This sample represents a binned metagenome assembled from the metagenomic runs SRR14332514, SRR14332515, SRR14332536, SRR14332537, SRR14332561, SRR14332560 of study SRP314237.
description
Skin swab
environmental medium
USA
geographic location (country and/or sea)
not applicable
DD
geographic location (latitude)
not applicable
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human skin metagenome
isolation_source
N
local environmental context
human skin metagenome
metagenomic source
Lawsonella clevelandensis
organism
Metagenomic assemblies and bins underlying the Skin Microbial Genome Catalogue
project name
ERS25060473
sample derived from
Lawsonella clevelandensis
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
binned metagenome: SAMPLE_136_bin.4
title