2025-07-28
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25327541
SRA accession
SRR25737861_concoct_37
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit_v1.2.9
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2023-03-15
collection date
51.27
%
completeness score
CheckM2_v1.0.1
completeness software
4.93
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR25737861 of study SRP456588.
description
tomato
environmental medium
India
geographic location (country and/or sea)
29.53300000
DD
geographic location (latitude)
75.01700000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Cellvibrio sp.
organism
Combined effect of microplastics and fungicides on the growth of tomato and metagenome of rhizosphere soil.
project name
SAMN36922550
sample derived from
uncultured Cellvibrio sp.
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR25737861_concoct_37
title