2025-07-28
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25327540
SRA accession
SRR28289115_metabat2_3
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
not provided
collection date
73.87
%
completeness score
CheckM2_v1.0.1
completeness software
1.92
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR28289115 of study SRP494495.
description
tomato
environmental medium
India
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Hyphomicrobiales bacterium
organism
The study was carried out to explore the diversity of microorganisms present in the organic fields of Shimla, in comparison to bulk soil and soil under conventional farming practice. Different plants, namely tomato, chilli and apple farms were targeted for sample collection and analysis for the present study.
project name
SAMN39504437
sample derived from
uncultured Hyphomicrobiales bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR28289115_metabat2_3
title