2025-07-28
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25321240
SRA accession
SRR1714142_concoct_17
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
megahit_v1.2.9
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
marine sediments
broad-scale environmental context
EBI-EMG
broker name
2012-07-26
collection date
60.11
%
completeness score
CheckM2_v1.0.1
completeness software
3.5
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1714142 of study SRP051172.
description
sinking marine particle
environmental medium
Pacific Ocean
geographic location (country and/or sea)
22.67700000
DD
geographic location (latitude)
-158.88100000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine sediment metagenome
isolation_source
subtropical gyre
local environmental context
marine sediment metagenome
metagenomic source
uncultured Marinobacter sp.
organism
This study explores the taxonomic and metabolic diversity of microbes associated with sinking particles in the North Pacific Subtropical Gyre. Marine particles are hotspots of microbial activity, yet the microbial taxa and biochemical processes involved in carbon and energy cycling on sinking particles are poorly understood. Metagenomes generated in this study revealed new insights into the important taxa and metabolisms involved in microbial processing of marine particles.
project name
SAMN03264846
sample derived from
uncultured Marinobacter sp.
scientific_name
Illumina MiSeq
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR1714142_concoct_17
title