2025-07-29
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25327560
SRA accession
SRR28044140_concoct_11
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2021-07-10T16:40:00Z
collection date
79.12
%
completeness score
CheckM2_v1.0.1
completeness software
2.51
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR28044140 of study SRP490933.
description
tomato
environmental medium
China
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Fluviicola sp.
organism
Metagenomics DNA sequencing revealing the rhizosphere bacterial functions associated with tomato health
project name
SAMN40029849
sample derived from
uncultured Fluviicola sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR28044140_concoct_11
title