2025-07-29
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25327545
SRA accession
SRR29743979_binner23_Refined_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2023-05-05
collection date
65.28
%
completeness score
CheckM2_v1.0.1
completeness software
2.84
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR29743979 of study SRP518589.
description
tomato
environmental medium
China
geographic location (country and/or sea)
32.03000000
DD
geographic location (latitude)
118.50000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Croceibacterium sp.
organism
To assess the impact of Tgmfs4-mediated alterations in BFI on the effectiveness of FWD control, rhizosphere soil samples were collected from pot experiments comprising three treatments: CK, Tg-WT+SQR9, and Tgmfs4+SQR9. These samples were then subjected to shotgun metagenomic sequencing.
project name
SAMN42378329
sample derived from
uncultured Croceibacterium sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR29743979_binner23_Refined_1
title