2025-07-29
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25334353
SRA accession
SRR14536362_metabat2_49
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPADES_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2018-12-11
collection date
74.99
%
completeness score
CheckM2_v1.0.1
completeness software
3.07
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14536362 of study SRP319842.
description
tomato
environmental medium
China
geographic location (country and/or sea)
32.02000000
DD
geographic location (latitude)
118.50006800
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
Pseudoxanthomonas mexicana
organism
Artificial microbial manipulation can suppress soil born disease through rhizosphere assemblage. Here, 16S amplicons and metagenomics of a pot experiment were used to demonstrate the rhizosphere suppression behavior under pathogen invasion.
project name
SAMN18928395
sample derived from
Pseudoxanthomonas mexicana
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR14536362_metabat2_49
title