2025-07-29
ENA first public
ERC000033
ENA-CHECKLIST
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
INSDC center name
public
INSDC status
ERS24612636
SRA accession
USUV_GridION_run742_bc70
Submitter Id
ERASMUS MC, UNIVERISTY MEDICAL CENTER
broker name
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collecting institution
2022-08
collection date
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collector name
Usutu virus
common name
Mosquito samples testing RT-PCR positive for Usutu virus (CT values below 32) were subjected to whole-genome sequencing using an amplicon-based Oxford Nanopore approach.
description
Netherlands
geographic location (country and/or sea)
52.13576
DD
geographic location (latitude)
5.00344
DD
geographic location (longitude)
Utrecht, Utrecht
geographic location (region and locality)
Culex pipiens/torrentium
host common name
not applicable
host health state
Culex pipiens/torrentium
host scientific name
female
host sex
MBRS1199
host subject id
USUV/NL/2022/MBRS1199
isolate
mosquito pool
isolation source host-associated
Usutu virus
organism
Münger et al. (preprint, 2024) Emergence and Dynamics of Usutu and West Nile Viruses in the Netherlands, 2016-2022
publication
active surveillance not initiated by an outbreak
sample capture status
Usutu virus
scientific_name
Host-derived Usutu virus, mosquitoes at bird ringing sites, the Netherlands
title