2025-07-29
ENA first public
ERC000033
ENA-CHECKLIST
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
INSDC center name
public
INSDC status
ERS24612624
SRA accession
USUV_GridION_run724_bc76
Submitter Id
ERASMUS MC, UNIVERISTY MEDICAL CENTER
broker name
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collecting institution
2022-07-28
collection date
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collector name
Usutu virus
common name
Samples from free-ranging birds testing RT-PCR positive for Usutu virus (CT values below 32) were subjected to whole-genome sequencing using an amplicon-based Oxford Nanopore approach.
description
Netherlands
geographic location (country and/or sea)
51.45
DD
geographic location (latitude)
5.53
DD
geographic location (longitude)
Noord-Brabant, Eindhoven
geographic location (region and locality)
Eurasian Blackbird
host common name
dead
host disease outcome
not applicable
host health state
Turdus merula
host scientific name
not provided
host sex
AS20221627
host subject id
USUV/NL/2022/AS20221627
isolate
brain
isolation source host-associated
Usutu virus
organism
Münger et al. (preprint, 2024) Emergence and Dynamics of Usutu and West Nile Viruses in the Netherlands, 2016-2022
publication
active surveillance not initiated by an outbreak
sample capture status
Usutu virus
scientific_name
Host-derived Usutu virus, dead free-ranging bird, the Netherlands
title