2025-07-29
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25335407
SRA accession
SRR21876570_metabat2_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2022-04
collection date
57.56
%
completeness score
CheckM2_v1.0.1
completeness software
2.73
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR21876570 of study SRP402195.
description
maize
environmental medium
South Africa
geographic location (country and/or sea)
-25.93000000
DD
geographic location (latitude)
31.94000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured bacterium
organism
The goal of the study is to reveal the microbial composition and functional genes within maize rhizosphere infected with Striga hermontheca using a next-generation sequencing approach. This improved ecological understanding will open up avenues to develop practical control strategies for Striga hermontheca
project name
SAMN31249016
sample derived from
uncultured bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR21876570_metabat2_1
title