2025-07-30
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25336077
SRA accession
SRR15517647_binner13_Refined_2
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPADES_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2019-10-15
collection date
96.9
%
completeness score
CheckM2_v1.0.1
completeness software
1.88
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15517647 of study SRP333163.
description
tomato
environmental medium
China
geographic location (country and/or sea)
45.41000000
DD
geographic location (latitude)
126.37000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Streptomyces sp.
organism
Tomato rhizosphere microbiome in the belowground segregation experiment is analyzed by metagenomic sequencing.
project name
SAMN20841029
sample derived from
uncultured Streptomyces sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR15517647_binner13_Refined_2
title