2025-07-29
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25329329
SRA accession
SRR29873475_metabat2_6
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2022-12
collection date
96.79
%
completeness score
CheckM2_v1.0.1
completeness software
2.83
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR29873475 of study SRP520680.
description
tomato
environmental medium
China
geographic location (country and/or sea)
36.66000000
DD
geographic location (latitude)
117.27000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured bacterium
organism
Phosphate-solubilizing bacteria (PSB) can transform insoluble phosphorus into soluble phosphorus, which reduces the demand for phosphorus fertilizer and promotes the growth of plants, but the understanding of these microecological effects is very limited. The effects of PSB on the structure and functions of tomato rhizosphere microbial community were studied by amplicon sequencing and metagenomic sequencing in this project.
project name
SAMN42501686
sample derived from
uncultured bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR29873475_metabat2_6
title