2025-07-30
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25336759
SRA accession
SRR11092509_concoct_15
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPADES_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2015-05-11
collection date
75.26
%
completeness score
CheckM2_v1.0.1
completeness software
1.33
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR11092509 of study SRP249622.
description
tomato
environmental medium
Mexico
geographic location (country and/or sea)
19.32110000
DD
geographic location (latitude)
-99.19440000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Brevundimonas sp.
organism
The purpose of this study is to describe the metabolic functions of soils, rhizospheres of locally growing ruderal plants, and rhizospheres of Solanum lycopersicum grown in a common garden experiment. Whole Shotgun Metagenomes of bulk soils and rhizospheres of Solanum lycopersicum and ruderal plants were described through massive Illumina (HiSeq) sequencing . Soils and ruderal plants roots were collected from 6 different locations, Solanum lycopersicum roots originated from a common garden experiment using the same soils.
project name
SAMN13942208
sample derived from
uncultured Brevundimonas sp.
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR11092509_concoct_15
title