2025-07-30
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25339118
SRA accession
SRR15517665_binner13_Refined_7
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPADES_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2019-08-15
collection date
52.1
%
completeness score
CheckM2_v1.0.1
completeness software
0.44
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR15517665 of study SRP333165.
description
tomato
environmental medium
China
geographic location (country and/or sea)
45.41000000
DD
geographic location (latitude)
126.37000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured bacterium
organism
Tomato rhizosphere microbiome in the pot experiment was analyzed by metagenomic sequencing.
project name
SAMN20841011
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR15517665_binner13_Refined_7
title