2025-07-31
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25340662
SRA accession
SRR29654718_concoct_22
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2022-04-14
collection date
99.91
%
completeness score
CheckM2_v1.0.1
completeness software
0.52
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR29654718 of study SRP517058.
description
tomato
environmental medium
China
geographic location (country and/or sea)
32.02000000
DD
geographic location (latitude)
118.50000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Pandoraea sp.
organism
The study aims to investigate the effects of different fertilization practices during various growth stages of tomatoes on the abundance and dynamics of antibiotic resistance genes (ARGs) in the soil. Understanding the mechanisms behind these impacts is critical, as ARGs pose a significant threat to public health by promoting the development and spread of antibiotic-resistant bacteria. By examining the influence of organic, inorganic, and combined fertilization methods on ARG profiles, as well as considering factors such as microbial community composition and soil physicochemical properties, this research seeks to elucidate how fertilization strategies might mitigate or exacerbate the propagation of ARGs in agricultural environments. The findings from this study will provide valuable insights for developing sustainable farming practices that minimize the risk of ARG proliferation, thereby contributing to the broader effort of combating antibiotic resistance.
project name
SAMN41999910
sample derived from
uncultured Pandoraea sp.
scientific_name
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR29654718_concoct_22
title