2025-08-08
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25424720
SRA accession
SRR7188607_maxbin2_1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPADES_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2015
collection date
64.78
%
completeness score
CheckM2_v1.0.1
completeness software
3.87
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR7188607 of study SRP127030.
description
barley
environmental medium
China
geographic location (country and/or sea)
40.03000000
DD
geographic location (latitude)
116.28000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured bacterium
organism
In this study, we conducted a large-scale field experiment to uncover the effects of plant holobiont on soil microbial biodiversity and co-occurrence networks in Tibetan Plateau. We select annual plant Tibetan hulless barley and perennial plant alfalfa, both of them are broadly planted in Tibetan Plateau, for soil microbial biodiversity investigation. Comparative metagenomic analysis, which integrates with 16S rDNA, rpoB and shotgun sequencing were used in this study.
project name
SAMN09217712
sample derived from
uncultured bacterium
scientific_name
Illumina HiSeq 3000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR7188607_maxbin2_1
title