2025-08-12
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25453078
SRA accession
SRR29710052_binner13_Refined_8
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPADES_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2021-11-16
collection date
99.8
%
completeness score
CheckM2_v1.0.1
completeness software
1.4
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR29710052 of study SRP518079.
description
barley
environmental medium
Denmark
geographic location (country and/or sea)
56.10046000
DD
geographic location (latitude)
10.11416000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Thermomonas sp.
organism
Extensive rhizobacterial culture collections were established from Arabidopsis thaliana grown in Reijerscamp soil (NL), Hordeum vulgare and Zea Mays grown in Askov soil (DK), and Lotus japonicus grown in Cologne Agricultural Soil (GE) (all natural soil). These culture collections were recultivated into large complex synthetic communities (Arabidopsis thaliana SynCom (AtSC - 447 members), Hordeum vulgare SynCom (HvSC -364 members), and Lotus japonicus (177 members)) and reinoculated onto the three hosts. In addition, all members of the three rhizobacterial culture collections were reconstituted into the SuperSynCom (SSC - 988 members) and inoculated similarly onto the three hosts.</p><p>The goal was to investigate general and host-specific root colonization strategies of rhizobacteria and root microbiome assembly in complex community contexts. This was achieved by investigating both the taxonomic and functional microbiome composition.
project name
SAMN42329144
sample derived from
uncultured Thermomonas sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR29710052_binner13_Refined_8
title