2025-08-13
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25456081
SRA accession
SRR18156212_binner123_Refined_3
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPADES_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2021-09-20
collection date
100
%
completeness score
CheckM2_v1.0.1
completeness software
0.42
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR18156212 of study SRP361660.
description
tomato
environmental medium
Netherlands
geographic location (country and/or sea)
51.98000000
DD
geographic location (latitude)
5.67000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Niastella sp.
organism
We studied the relationship between plant domestication, soil management, and microbiome. Two tomato genotypes (S. pimpinellifolium and S. lycopersicum var. Moneymaker) were grown in sand:soil mixtures and the rhizosphere microbiome functional profiles were investigated using shotgun metagenomics.
project name
SAMN26281797
sample derived from
uncultured Niastella sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR18156212_binner123_Refined_3
title