2025-08-14
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25494169
SRA accession
SRR28262199_binner12_Refined_15
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2023-01-16
collection date
94.89
%
completeness score
CheckM2_v1.0.1
completeness software
0.28
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR28262199 of study SRP493956.
description
tomato
environmental medium
China
geographic location (country and/or sea)
24.58000000
DD
geographic location (latitude)
118.10000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured bacterium
organism
We aimed to (1) determine the composition of microbiomes and resistomes in xylem (2) explore the effects of sludge addition on xylem ARG risks, including abundance, mobility, pathogenicity, activity, and accumulation (3) elucidate potential mechanisms behind the shifts in xylem resistomes under sludge addition.
project name
SAMN40242070
sample derived from
uncultured bacterium
scientific_name
DNBSEQ-T7
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR28262199_binner12_Refined_15
title