2025-08-14
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS25475584
SRA accession
SRR16817047_binner12_Refined_46
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.2.0
binning software
soil
broad-scale environmental context
EBI-EMG
broker name
2019-08/2019-09
collection date
88.06
%
completeness score
CheckM2_v1.0.1
completeness software
3.64
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR16817047 of study SRP344777.
description
tomato
environmental medium
China
geographic location (country and/or sea)
30.47000000
DD
geographic location (latitude)
114.35000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
rhizosphere metagenome
isolation_source
rhizosphere
local environmental context
rhizosphere metagenome
metagenomic source
uncultured Verrucomicrobiales bacterium
organism
Amplicon and metagenomic sequencing of tomato progeny and its parents
project name
SAMN22899823
sample derived from
uncultured Verrucomicrobiales bacterium
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR16817047_binner12_Refined_46
title