2025-08-14
ENA first public
ERC000033
ENA-CHECKLIST
IGNORE_SUBMIT_ONLY_CONSENSUS_NEW_CORRECTION_EMMA
INSDC accession
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
INSDC center name
public
INSDC status
ERS25448816
SRA accession
USUV_GridION_run143_bc07
Submitter Id
ERASMUS MC, UNIVERISTY MEDICAL CENTER
broker name
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collecting institution
2019-10-07
collection date
One Health Pact Consortium (2020–2022), EcoAlert Collaborative Team (2016–2019)
collector name
Usutu virus
common name
Samples from birds in captivity testing RT-PCR positive for Usutu virus (CT values below 32) were subjected to whole-genome sequencing using an amplicon-based Oxford Nanopore approach.
description
Netherlands
geographic location (country and/or sea)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
Gelderland
geographic location (region and locality)
White-rumped Shama
host common name
dead
host disease outcome
not applicable
host health state
Copsychus malabaricus
host scientific name
not provided
host sex
AS20190716
host subject id
USUV/NL/2019/AS20190716
isolate
mouth swab
isolation source host-associated
Usutu virus
organism
Münger et al. (preprint, 2024) Emergence and Dynamics of Usutu and West Nile Viruses in the Netherlands, 2016-2022
publication
active surveillance not initiated by an outbreak
sample capture status
Usutu virus
scientific_name
Host-derived Usutu virus, bird deceased in captivity, the Netherlands
title